The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons - Test2 - elhamkhani - TriplyDB

The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

http://www.wikidata.org/entity/Q35003675

about

PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny PhyloScan: identification of transcription factor binding sites using cross-species evidence RpoS controls the Vibrio cholerae mucosal escape response TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency Bioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolor Position specific variation in the rate of evolution in transcription factor binding sites Genome wide identification of regulatory motifs in Bacillus subtilis Conservation and evolution of cis-regulatory systems in ascomycete fungi In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection The UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase fold.Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species More robust detection of motifs in coexpressed genes by using phylogenetic information.Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs.A model of evolution with constant selective pressure for regulatory DNA sites.Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.Orthologous transcription factors in bacteria have different functions and regulate different genes.Finding regulatory elements and regulatory motifs: a general probabilistic framework.From biophysics to evolutionary genetics: statistical aspects of gene regulation.Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria.Stabilization of the genome of the mismatch repair deficient Mycobacterium tuberculosis by context-dependent codon choice.From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters.Making connections between novel transcription factors and their DNA motifs.Evolution of two-component signal transduction systems Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics.Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.Identification of the binding sites of regulatory proteins in bacterial genomes Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling Several archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars.An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix.A new framework for identifying cis-regulatory motifs in prokaryotes.Evolutionary meandering of intermolecular interactions along the drift barrier.Factors influencing the identification of transcription factor binding sites by cross-species comparison.Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networks Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli.Indirect and suboptimal control of gene expression is widespread in bacteria.Bioinformatics resources for the study of gene regulation in bacteria Identification of SmtB/ArsR cis elements and proteins in archaea using the Prokaryotic InterGenic Exploration Database (PIGED)

P2860

Q21145693-19A32BEA-EC46-4287-8DC9-76BEE89C66E2 Q21203111-AAF12FED-A045-4DFE-A176-4CD411355D6C Q21559520-F9A96C85-B84E-4F7B-BAFC-696606EAEE57 Q24794743-B306B18F-564F-4BA2-858C-AEDF3842CC5C Q24796851-BF39100E-C732-4C0A-BF4E-EE93F2FEE6AB Q24803266-37000B65-7A8E-4780-A8F8-18128CD848AB Q24803388-1706475A-A170-4F9F-B3B8-7AD3FAF70681 Q24806496-EC187284-4B30-4494-A604-350D3579A54A Q24806939-46EF3EE6-9E33-48E4-A9E1-532BB1874F1C Q24807196-95E16E30-D335-4E54-A0DF-C435D03BCEE6 Q30407431-0E1DD015-A90C-4413-96F7-CAFDE4893440 Q30535293-8E4A66A1-53BE-4609-AC17-359063F81DBA Q30566297-5B7F5411-9B13-4411-862A-13DAA33D7573 Q33237075-74AF542E-3AEA-4C3E-986E-357ADAD2CE71 Q33259102-1B320294-474E-42AD-9C63-17186DB24F8F Q33292268-D7C16028-B9A9-4A63-B5DB-478BEE9EC94F Q33295393-6A4CB4CF-AE6E-4B52-8763-6B4F4CD2769D Q33298403-8585BA76-0C75-4FCD-BAF4-91DD1A2F978B Q33300800-6B09E870-C59F-4231-BEE2-5C8BC86540FD Q33300807-1EBF4636-E7F1-4E97-AA05-EAAB3CD2E65A Q33325648-EE65A0D5-A645-4A32-93A7-1903C3040210 Q33338279-61D1DFED-71CF-4779-9487-0CF0512E996F Q33505840-7A7154B8-2A2D-4924-BC4B-9759EC7B08F9 Q33780899-7088C8CB-AED9-49D1-A10F-91A2954ABDE7 Q33898396-385F7153-90E1-4CA6-8BC0-1B4777506722 Q34063477-8398E53F-E41F-4DB0-BEF6-2FAD50C927E2 Q34115908-13FEA274-2594-4BA2-9B4C-A57D4942C7CA Q34154311-A6C3313F-2300-4D46-B3D5-B153165F2541 Q34388505-5A5FFF06-4E08-4200-8EF0-B32304C4F75A Q34431447-EA59B5A1-FFF0-4411-BDD8-3DEFFC77AFD1 Q34466180-80611384-B206-4CF5-BEF8-E43B0AC86F42 Q34682258-3EA70464-D2AE-44CB-B705-B0F33C316DFF Q34779511-606FAFD4-D0DA-44CF-B664-78F1AA948D2F Q34926385-8D1B523D-2553-443D-ABA3-68C3643FE894 Q35805952-53D625F3-8E15-4677-811F-3A8E3DE904A2 Q35966780-B55CB066-35F6-47AD-98D8-0C283C63FCEC Q36673438-53235A7D-A630-4F9B-A4CB-F2C5CBD95B50 Q36856676-AFCCB7BB-25E8-4EDA-B601-99CED6104355 Q37033434-517B67EA-C549-4C91-ACC9-795489252090 Q37200749-932A7301-AB31-4171-BDF6-31ECFA930D1E

P2860

The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons

http://www.wikidata.org/entity/Q35003675

description

2002 nî lūn-bûn

@nan

2002 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2002 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

2002年の論文

@ja

2002年論文

@yue

2002年論文

@zh-hant

2002年論文

@zh-hk

2002年論文

@zh-mo

2002年論文

@zh-tw

2002年论文

@wuu

name

The evolution of DNA regulator ...... ia by interspecies comparisons

@ast

The evolution of DNA regulator ...... ia by interspecies comparisons

@en

type

label

The evolution of DNA regulator ...... ia by interspecies comparisons

@ast

The evolution of DNA regulator ...... ia by interspecies comparisons

@en

prefLabel

The evolution of DNA regulator ...... ia by interspecies comparisons

@ast

The evolution of DNA regulator ...... ia by interspecies comparisons

@en

P1433

Q35003675-D829CBDF-58BD-4155-97C6-69F028A020BE

P1476

Q35003675-AF4BDCBD-27A5-4938-8580-0079A24C8F75

P2093

Q35003675-1658400F-3ED5-47AA-99B9-C4014EC4292F

Q35003675-76DD9EF1-2821-4AB4-8194-BDB4F89EBCC9

Q35003675-F3FB67E9-CF88-45EB-B568-13A502B98983

P2860

Q35003675-0450609E-BF0D-4A34-B440-F7CD8205214E

Q35003675-09EACC12-2669-43A2-B7E5-29B541437789

Q35003675-0FE1A4FB-0670-4940-963E-ACD7B4D308F5

Q35003675-13E0E890-598E-4461-97DE-3C77E0806C16

Q35003675-16AB61B1-0950-48F1-8C3F-0A6B57ADE4E9

Q35003675-2B97F52B-8243-42EF-9E47-025AFB53132E

Q35003675-2BE001F0-15D0-4060-B776-558B5AC67332

Q35003675-34577B93-003D-499C-BC87-9FC3489D1F2D

Q35003675-35B4BF9A-06AE-4185-9CA8-9A0D42CD6A59

Q35003675-3F3756AC-6BD4-4244-BF2B-ADB319CD6A97

P304

Q35003675-36868603-6758-4F3D-A3E0-6523BE4E04D9

P31

Q35003675-F4D0F03F-76F9-46AE-AEB4-07B873B37820

P356

Q35003675-58AB4FEF-8C4A-4AE8-B3A4-8682DB34ECCE

P433

Q35003675-2FFA3C72-067A-4EC5-8314-CE192D8D83FF

P478

Q35003675-F164A239-E776-4F58-B697-956FE2B04F8E

P50

Q35003675-810CEA01-6E4D-4F35-A686-DB94DD2754E4

P577

Q35003675-E6C0AC2D-400F-4478-8FCB-7C1F913FC6B4

P698

Q35003675-4274A155-4842-4A4E-9BCF-500EB3605CF1

P932

Q35003675-B206D912-10D2-4BAE-A46A-777C071D350D

P356

P1433

Genome Research

P1476

The evolution of DNA regulator ...... ia by interspecies comparisons

@en

P2093

Eric D Siggia

http://www.w3.org/2001/XMLSchema#string

Martin Zapotocky

http://www.w3.org/2001/XMLSchema#string

Nicholas D Socci

http://www.w3.org/2001/XMLSchema#string

P2860

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

Operons in Escherichia coli: genomic analyses and predictions

Identifying protein-binding sites from unaligned DNA fragments

Predicting gene regulatory elements in silico on a genomic scale

Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands

Crystal structure of trp repressor/operator complex at atomic resolution

Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface

Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

The DNA-binding domain of OmpR: crystal structures of a winged helix transcription factor

A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator

P304

298-308

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1101/GR.207502

http://www.w3.org/2001/XMLSchema#string

P433

2

http://www.w3.org/2001/XMLSchema#string

P478

12

http://www.w3.org/2001/XMLSchema#string

P50

Nikolaus Rajewsky

P577

2002-02-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P698

11827949

http://www.w3.org/2001/XMLSchema#string

P932

155268

http://www.w3.org/2001/XMLSchema#string