The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons
about
PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogenyPhyloScan: identification of transcription factor binding sites using cross-species evidenceRpoS controls the Vibrio cholerae mucosal escape responseTRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomesStatistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequencyBioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolorPosition specific variation in the rate of evolution in transcription factor binding sitesGenome wide identification of regulatory motifs in Bacillus subtilisConservation and evolution of cis-regulatory systems in ascomycete fungiIn silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detectionThe UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase fold.Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coliStatistical approaches to use a model organism for regulatory sequences annotation of newly sequenced speciesMore robust detection of motifs in coexpressed genes by using phylogenetic information.Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs.A model of evolution with constant selective pressure for regulatory DNA sites.Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.Orthologous transcription factors in bacteria have different functions and regulate different genes.Finding regulatory elements and regulatory motifs: a general probabilistic framework.From biophysics to evolutionary genetics: statistical aspects of gene regulation.Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria.Stabilization of the genome of the mismatch repair deficient Mycobacterium tuberculosis by context-dependent codon choice.From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters.Making connections between novel transcription factors and their DNA motifs.Evolution of two-component signal transduction systemsProbabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics.Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.Identification of the binding sites of regulatory proteins in bacterial genomesComparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profilingSeveral archaeal homologs of putative oligopeptide-binding proteins encoded by Thermotoga maritima bind sugars.An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors.The relative inefficiency of sequence weights approaches in determining a nucleotide position weight matrix.A new framework for identifying cis-regulatory motifs in prokaryotes.Evolutionary meandering of intermolecular interactions along the drift barrier.Factors influencing the identification of transcription factor binding sites by cross-species comparison.Signal correlations in ecological niches can shape the organization and evolution of bacterial gene regulatory networksHorizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli.Indirect and suboptimal control of gene expression is widespread in bacteria.Bioinformatics resources for the study of gene regulation in bacteriaIdentification of SmtB/ArsR cis elements and proteins in archaea using the Prokaryotic InterGenic Exploration Database (PIGED)
P2860
Q21145693-19A32BEA-EC46-4287-8DC9-76BEE89C66E2Q21203111-AAF12FED-A045-4DFE-A176-4CD411355D6CQ21559520-F9A96C85-B84E-4F7B-BAFC-696606EAEE57Q24794743-B306B18F-564F-4BA2-858C-AEDF3842CC5CQ24796851-BF39100E-C732-4C0A-BF4E-EE93F2FEE6ABQ24803266-37000B65-7A8E-4780-A8F8-18128CD848ABQ24803388-1706475A-A170-4F9F-B3B8-7AD3FAF70681Q24806496-EC187284-4B30-4494-A604-350D3579A54AQ24806939-46EF3EE6-9E33-48E4-A9E1-532BB1874F1CQ24807196-95E16E30-D335-4E54-A0DF-C435D03BCEE6Q30407431-0E1DD015-A90C-4413-96F7-CAFDE4893440Q30535293-8E4A66A1-53BE-4609-AC17-359063F81DBAQ30566297-5B7F5411-9B13-4411-862A-13DAA33D7573Q33237075-74AF542E-3AEA-4C3E-986E-357ADAD2CE71Q33259102-1B320294-474E-42AD-9C63-17186DB24F8FQ33292268-D7C16028-B9A9-4A63-B5DB-478BEE9EC94FQ33295393-6A4CB4CF-AE6E-4B52-8763-6B4F4CD2769DQ33298403-8585BA76-0C75-4FCD-BAF4-91DD1A2F978BQ33300800-6B09E870-C59F-4231-BEE2-5C8BC86540FDQ33300807-1EBF4636-E7F1-4E97-AA05-EAAB3CD2E65AQ33325648-EE65A0D5-A645-4A32-93A7-1903C3040210Q33338279-61D1DFED-71CF-4779-9487-0CF0512E996FQ33505840-7A7154B8-2A2D-4924-BC4B-9759EC7B08F9Q33780899-7088C8CB-AED9-49D1-A10F-91A2954ABDE7Q33898396-385F7153-90E1-4CA6-8BC0-1B4777506722Q34063477-8398E53F-E41F-4DB0-BEF6-2FAD50C927E2Q34115908-13FEA274-2594-4BA2-9B4C-A57D4942C7CAQ34154311-A6C3313F-2300-4D46-B3D5-B153165F2541Q34388505-5A5FFF06-4E08-4200-8EF0-B32304C4F75AQ34431447-EA59B5A1-FFF0-4411-BDD8-3DEFFC77AFD1Q34466180-80611384-B206-4CF5-BEF8-E43B0AC86F42Q34682258-3EA70464-D2AE-44CB-B705-B0F33C316DFFQ34779511-606FAFD4-D0DA-44CF-B664-78F1AA948D2FQ34926385-8D1B523D-2553-443D-ABA3-68C3643FE894Q35805952-53D625F3-8E15-4677-811F-3A8E3DE904A2Q35966780-B55CB066-35F6-47AD-98D8-0C283C63FCECQ36673438-53235A7D-A630-4F9B-A4CB-F2C5CBD95B50Q36856676-AFCCB7BB-25E8-4EDA-B601-99CED6104355Q37033434-517B67EA-C549-4C91-ACC9-795489252090Q37200749-932A7301-AB31-4171-BDF6-31ECFA930D1E
P2860
The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparisons
description
2002 nî lūn-bûn
@nan
2002 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2002 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2002年の論文
@ja
2002年論文
@yue
2002年論文
@zh-hant
2002年論文
@zh-hk
2002年論文
@zh-mo
2002年論文
@zh-tw
2002年论文
@wuu
name
The evolution of DNA regulator ...... ia by interspecies comparisons
@ast
The evolution of DNA regulator ...... ia by interspecies comparisons
@en
type
label
The evolution of DNA regulator ...... ia by interspecies comparisons
@ast
The evolution of DNA regulator ...... ia by interspecies comparisons
@en
prefLabel
The evolution of DNA regulator ...... ia by interspecies comparisons
@ast
The evolution of DNA regulator ...... ia by interspecies comparisons
@en
P2093
P2860
P356
P1433
P1476
The evolution of DNA regulator ...... ia by interspecies comparisons
@en
P2093
Eric D Siggia
Martin Zapotocky
Nicholas D Socci
P2860
P304
P356
10.1101/GR.207502
P577
2002-02-01T00:00:00Z