Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis - Test2 - elhamkhani - TriplyDB

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

http://www.wikidata.org/entity/Q35042967

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The expanding world of small RNAs in plants Arabidopsis AtMORC4 and AtMORC7 Form Nuclear Bodies and Repress a Large Number of Protein-Coding Genes Emerging roles of long non-coding RNA in root developmental plasticity and regulation of phosphate homeostasis Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery.Nascent transcription affected by RNA polymerase IV in Zea mays Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.Improved Placement of Multi-mapping Small RNAs.Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs.Control of Chromatin Structure by Long Noncoding RNA.Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.Long-range control of gene expression via RNA-directed DNA methylation Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis.Dicer-independent RNA-directed DNA methylation in Arabidopsis.A One Precursor One siRNA Model for Pol IV-Dependent siRNA Biogenesis.Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin.A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis.Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis.Trans-Homolog Interactions Facilitating Paramutation in Maize.The First Rule of Plant Transposable Element Silencing: Location, Location, Location.The RNAs of RNA-directed DNA methylation.Paramutation and related phenomena in diverse species.Exogenous Transposable Elements Circumvent Identity-Based Silencing, Permitting the Dissection of Expression-Dependent Silencing.Functional Dissection of the Pol V Largest Subunit CTD in RNA-Directed DNA Methylation.Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs.The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status.Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation.RNA polymerases IV and V influence the 3' boundaries of Polymerase II transcription units in Arabidopsis.Arabidopsis RNA Polymerase V Mediates Enhanced Compaction and Silencing of Geminivirus and Transposon Chromatin During Host Recovery from Infection.Catalytic properties of RNA polymerases IV and V: accuracy, nucleotide incorporation and rNTP/dNTP discrimination.Long Noncoding RNAs in Plants.Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis.RNA-directed DNA methylation involves co-transcriptional small-RNA-guided slicing of polymerase V transcripts in Arabidopsis.Paternal easiRNAs regulate parental genome dosage in Arabidopsis.Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention.Transposon-Derived Non-coding RNAs and Their Function in Plants.

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Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis

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2014 nî lūn-bûn

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2014 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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Detection of Pol IV/RDR2-depen ...... regulation of siRNA biogenesis

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Bin Tu

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Binglian Zheng

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Brian D Gregory

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Lee E Vandivier

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Shaofang Li

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Shengben Li

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So Youn Won

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

Genetic and functional diversification of small RNA pathways in plants

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

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