Transposable elements contribute to activation of maize genes in response to abiotic stress. - Test2 - elhamkhani - TriplyDB

Transposable elements contribute to activation of maize genes in response to abiotic stress.

Transposable elements contribute to activation of maize genes in response to abiotic stress.

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Reconsidering plant memory: Intersections between stress recovery, RNA turnover, and epigenetics Genetic and epigenetic control of plant heat responses The Role and Regulation of ABI5 (ABA-Insensitive 5) in Plant Development, Abiotic Stress Responses and Phytohormone Crosstalk GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.Methods for accurate quantification of LTR-retrotransposon copy number using short-read sequence data: a case study in Sorghum.A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize Genomic abundance is not predictive of tandem repeat localization in grass genomes.Authentic Research Experience and "Big Data" Analysis in the Classroom: Maize Response to Abiotic Stress Genome-wide analysis of LTR-retrotransposons in oil palm.Heritable gene expression differences between apomictic clone members in Taraxacum officinale: Insights into early stages of evolutionary divergence in asexual plants.RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73.Genome-wide characterization of non-reference transposons in crops suggests non-random insertion.Isolation, characterization, and marker utility of KCRE1, a transcriptionally active Ty1/copia retrotransposon from Kandelia candel.Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening.A transposable element in a NAC gene is associated with drought tolerance in maize seedlings Somatizing the transposons action.A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity Plant Abiotic Stress Challenges from the Changing Environment.Stress-induced and epigenetic-mediated maize transcriptome regulation study by means of transcriptome reannotation and differential expression analysis DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity.Population scale mapping of transposable element diversity reveals links to gene regulation and epigenomic variation.Plant Stress Responses and Phenotypic Plasticity in the Epigenomics Era: Perspectives on the Grapevine Scenario, a Model for Perennial Crop Plants.Unbiased K-mer Analysis Reveals Changes in Copy Number of Highly Repetitive Sequences During Maize Domestication and Improvement.Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero Toluqueño.Transcriptional Activity of Transposable Elements May Contribute to Gene Expression Changes in the Syncytium Formed by Cyst Nematode in Arabidopsis Roots.Single-base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple.Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response.Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize.The First Rule of Plant Transposable Element Silencing: Location, Location, Location.Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.Genomic limitations to RNA sequencing expression profiling.Expression dynamics and relations with nearby genes of rat transposable elements across 11 organs, 4 developmental stages and both sexes.Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize.Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions.Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress.Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq.Methylation Sensitive Amplification Polymorphism Sequencing (MSAP-Seq)-A Method for High-Throughput Analysis of Differentially Methylated CCGG Sites in Plants with Large Genomes.

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Transposable elements contribute to activation of maize genes in response to abiotic stress.

http://www.wikidata.org/entity/Q35540124

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2015 թուականի Յունուարին հրատարակուած գիտական յօդուած

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Transposable elements contribu ...... in response to abiotic stress.

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Amanda J Waters

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Candice N Hirsch

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Irina Makarevitch

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Jeffrey Ross-Ibarra

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Michelle Stitzer

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Nathan M Springer

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Patrick T West

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Differential expression analysis for sequence count data

The B73 Maize Genome: Complexity, Diversity, and Dynamics

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges

TopHat: discovering splice junctions with RNA-Seq

Primer3 on the WWW for general users and for biologist programmers

Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants

Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?

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