PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification.
about
TreeFam: 2008 UpdateBiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studiesThe PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classificationIntegration of biological networks and gene expression data using CytoscapeGetting started in structural phylogenomicsCollaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBaseExploring the structure and function paradigm.Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB.RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank.The FGGY carbohydrate kinase family: insights into the evolution of functional specificitiesBeyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.Automated protein subfamily identification and classification.PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees.GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains.Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport.Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family informationObjective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focusRapid catalytic template searching as an enzyme function prediction procedure.Ortholog identification in the presence of domain architecture rearrangement.In vivo phosphorylation patterns of key stressosome proteins define a second feedback loop that limits activation of Bacillus subtilis σB.The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatulaBerkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis.Species-specific chitin-binding module 18 expansion in the amphibian pathogen Batrachochytrium dendrobatidis.The quest for natural selection in the age of comparative genomics.Berkeley PHOG: PhyloFacts orthology group prediction web serverINTREPID: a web server for prediction of functionally important residues by evolutionary analysisA comparative genomics, network-based approach to understanding virulence in Vibrio choleraeInsight into the haem d1 biosynthesis pathway in heliobacteria through bioinformatics analysisThe Classification of Protein Domains.Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.Gene Phylogenies and Orthologous Groups.
P2860
Q24650511-BD4AEB9F-AA45-4AF4-BC69-628BC9CC34A0Q28476821-542A0C46-6587-4B04-9E7B-6B89F54EA944Q28681144-155C6AB6-AFD9-45D2-9C5C-5D75A282EC6BQ28681323-483882F1-72DC-4264-92FC-3C1510BEA4FAQ28749140-D8D794FC-B9BE-40C7-AFA0-3A1DBC8B27C2Q28749600-94476B81-75CF-40B8-AD4A-EEBD95F57C7BQ30369983-EB652591-FA35-4840-920C-2B723FBECD95Q30430641-BEC11586-0FED-4CFB-B8E4-FD890A19E0F2Q30967498-AADFC40A-0DEB-4F25-9424-C914C8F44837Q31044431-C3E94EF0-8EE0-4955-8FEA-5719EC4FC350Q31121929-10D3CDF2-792C-42A8-901C-D488886D9A44Q33294652-73448F55-07A7-4CBE-81C7-D97872BC62E1Q33504914-CE1A9E6A-55F6-47E4-B23C-48256F4363DDQ33633731-97503ACE-F004-4A0B-A224-71A779A60049Q33640140-1F2DD269-D9C8-46BD-B090-D4E99D71D71EQ34039734-A4EBE4EE-222C-40AA-B4C1-FB77B7F745ECQ34401467-BE29556B-BBA3-455F-AED3-5E876EBCFA32Q34444444-DB8E3561-332E-4DBF-B09D-7D049C34C168Q34509978-CFA7FBAF-3B16-4DA4-932C-808ED30FF910Q34722623-2C66D7DE-4141-4AEA-B8BF-0B92687B7B9AQ35226472-DA5F3BF2-DD34-4ACB-8994-B88BF6C88131Q35510379-D89F5151-9354-441A-9A42-C9C2858989F2Q35532787-C67C42B1-D32F-4180-90B6-A4E888CB9777Q35914201-36240218-8419-423C-AC77-E1D90120B1EAQ36602768-28575888-28C8-4207-BACF-DFA1A2BE65C2Q36937898-5803C2E1-1EC6-41CD-BE8A-44857189F985Q37245580-4A17A825-F89F-4DDF-97F8-4383965E5FB0Q37245584-82FBF5B7-4579-4E8B-B03A-52A76ED844CCQ37365229-EA561392-E625-40E9-AAF7-9725BAB26BB4Q37415114-316A8333-8ADA-4773-8F34-6C9B0B4F2969Q39146480-1311E63E-4787-4FC2-8EC3-1C18B85D78DFQ40771581-FEE61C01-8489-404B-922E-9746F28189ADQ47254705-2F6B8942-D473-43A5-92FC-F71CBDDFA31A
P2860
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
2006年论文
@zh
2006年论文
@zh-cn
name
PhyloFacts: an online structur ...... and structural classification.
@ast
PhyloFacts: an online structur ...... and structural classification.
@en
type
label
PhyloFacts: an online structur ...... and structural classification.
@ast
PhyloFacts: an online structur ...... and structural classification.
@en
prefLabel
PhyloFacts: an online structur ...... and structural classification.
@ast
PhyloFacts: an online structur ...... and structural classification.
@en
P2093
P2860
P356
P1433
P1476
PhyloFacts: an online structur ...... and structural classification.
@en
P2093
Dan Kirshner
Duncan P Brown
Kimmen Sjölander
Nandini Krishnamurthy
P2860
P2888
P356
10.1186/GB-2006-7-9-R83
P577
2006-01-01T00:00:00Z