RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction - Test2 - elhamkhani - TriplyDB

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

http://www.wikidata.org/entity/Q35853409

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Fundamental challenges in mechanistic enzymology: progress toward understanding the rate enhancements of enzymes Review toward all RNA structures, concisely Understanding nucleic acid-ion interactions The impact of a ligand binding on strand migration in the SAM-I riboswitch Novel Conformation of an RNA Structural Switch Discovering RNA-protein interactome by using chemical context profiling of the RNA-protein interface CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction Blind tests of RNA nearest-neighbor energy prediction Stacking in RNA: NMR of Four Tetramers Benchmark Molecular Dynamics Protein modeling: what happened to the "protein structure gap"?Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.Quantifying side-chain conformational variations in protein structure Predicting helical topologies in RNA junctions as tree graphs.Classification of RNA structure change by 'gazing' at experimental data.Consistent global structures of complex RNA states through multidimensional chemical mapping.RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.Computational modeling of RNA 3D structures, with the aid of experimental restraints.Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity.Direct-Coupling Analysis of nucleotide coevolution facilitates RNA secondary and tertiary structure prediction.Correcting pervasive errors in RNA crystallography through enumerative structure prediction.SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.RNAmap2D - calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures.Network Theory Tools for RNA Modeling.R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures From static to dynamic: the need for structural ensembles and a predictive model of RNA folding and function The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.Extensive site-directed mutagenesis reveals interconnected functional units in the alkaline phosphatase active site.GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies RNA modeling, naturally RNAssess--a web server for quality assessment of RNA 3D structures.A Large-Scale Assessment of Nucleic Acids Binding Site Prediction Programs.Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles Automated and fast building of three-dimensional RNA structures.GARN2: coarse-grained prediction of 3D structure of large RNA molecules by regret minimization.Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions Taking a cellular road-trip: mRNA transport and anchoring.Structural Analysis of Multi-Helical RNAs by NMR-SAXS/WAXS: Application to the U4/U6 di-snRNA.

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

http://www.wikidata.org/entity/Q35853409

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2012 nî lūn-bûn

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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2012年论文

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2012年论文

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name

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction

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Christina Waldsich

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Dinshaw J Patel

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François Major

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Fredrick Sijenyi

http://www.w3.org/2001/XMLSchema#string

Irina Tuszynska

http://www.w3.org/2001/XMLSchema#string

John Santalucia

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Katarzyna Mikolajczak

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Kevin M Weeks

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Lili Huang

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Magdalena Rother

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Mfold web server for nucleic acid folding and hybridization prediction

The Protein Data Bank

Geometric nomenclature and classification of RNA base pairs

RNAstructure: software for RNA secondary structure prediction and analysis

Turning limited experimental information into 3D models of RNA

Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning

High-resolution structure prediction and the crystallographic phase problem

VARNA: Interactive drawing and editing of the RNA secondary structure

Rfam: updates to the RNA families database

LGA: A method for finding 3D similarities in protein structures

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610-625

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scholarly article

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10.1261/RNA.031054.111

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4

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18

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Janusz Bujnicki

Neocles Leontis

Nikolay V. Dokholyan

Alexander Serganov

José Almeida Cruz

Christopher A Lavender

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2012-02-23T00:00:00Z

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221857653

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22361291

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3312550

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