An RNA Mapping DataBase for curating RNA structure mapping experiments.
about
Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-SeqRich RNA Structure Landscapes Revealed by Mutate-and-Map AnalysisThe First Report of miRNAs from a Thysanopteran Insect, Thrips palmi Karny Using High-Throughput SequencingTranscending the prediction paradigm: novel applications of SHAPE to RNA function and evolutionStandardization of RNA chemical mapping experimentsHiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresisSeqFold: genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data.Computational analysis of RNA structures with chemical probing data.SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing dataImproved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataAnalysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.Classification of RNA structure change by 'gazing' at experimental data.RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozymeThe mutate-and-map protocol for inferring base pairs in structured RNA.Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states.SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.Sampled ensemble neutrality as a feature to classify potential structured RNAsRNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.Combining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces.Probing-directed identification of novel structured RNAs.Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).SimRNAweb: a web server for RNA 3D structure modeling with optional restraints.RNA structure through multidimensional chemical mapping.Mapping RNA Structure In Vitro with SHAPE Chemistry and Next-Generation Sequencing (SHAPE-Seq).High-throughput determination of RNA structure by proximity ligation.Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families.RNArchitecture: a database and a classification system of RNA families, with a focus on structural information.Determination of in vivo RNA structure in low-abundance transcripts.Updates to the RNA mapping database (RMDB), version 2.Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure.Molecular Dynamics Simulations Reveal an Interplay between SHAPE Reagent Binding and RNA Flexibility.Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping.'/Command' and Conquer: Analysing Discussion in a Citizen Science Game
P2860
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P2860
An RNA Mapping DataBase for curating RNA structure mapping experiments.
description
2012 nî lūn-bûn
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2012年の論文
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2012年学术文章
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name
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@ast
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@en
type
label
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@ast
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@en
prefLabel
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@ast
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@en
P2860
P356
P1433
P1476
An RNA Mapping DataBase for curating RNA structure mapping experiments.
@en
P2093
Julius B Lucks
Pablo Cordero
P2860
P304
P356
10.1093/BIOINFORMATICS/BTS554
P407
P50
P577
2012-09-12T00:00:00Z