Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM) - Test2 - elhamkhani - TriplyDB

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

http://www.wikidata.org/entity/Q36676569

about

Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining New Insights into the Biosynthetic Logic of Ribosomally Synthesized and Post-translationally Modified Peptide Natural Products.Computational genomic identification and functional reconstitution of plant natural product biosynthetic pathways.Complete Genome Sequence of Rhodococcus sp. Strain WMMA185, a Marine Sponge-Associated Bacterium.Draft Genome Sequence of Micromonospora sp. Strain WMMB235, a Marine Ascidian-Associated Bacterium.Draft Genome Sequence of Streptomyces silvensis ATCC 53525, a Producer of Novel Hormone Antagonists Current Status and Future Prospects of Marine Natural Products (MNPs) as Antimicrobials.SANDPUMA: Ensemble Predictions of Nonribosomal Peptide Chemistry Reveals Biosynthetic Diversity across Actinobacteria.A new genome-mining tool redefines the lasso peptide biosynthetic landscape.Towards Precision Engineering of Canonical Polyketide Synthase Domains: Recent Advances and Future Prospects.The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery.SeMPI: a genome-based secondary metabolite prediction and identification web server.Antibiotic drug discovery.The contribution of genome mining strategies to the understanding of active principles of PGPR strains.Mining Bacterial Genomes for Secondary Metabolite Gene Clusters.Targeting Reactive Carbonyls for Identifying Natural Products and Their Biosynthetic Origins.Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.Nonribosomal peptide synthetase biosynthetic clusters of ESKAPE pathogens.Draft Genome Sequence of an Endophytic Actinoplanes Species, Encoding Uncommon trans-Acyltransferase Polyketide Synthases Draft Genome Sequence of Streptomyces canus ATCC 12647, a Producer of Telomycin Function-related replacement of bacterial siderophore pathways.PRISM 3: expanded prediction of natural product chemical structures from microbial genomes.antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.Comparative Genomics of Bacillus amyloliquefaciens Strains Reveals a Core Genome with Traits for Habitat Adaptation and a Secondary Metabolites Rich Accessory Genome.RiPPMiner: a bioinformatics resource for deciphering chemical structures of RiPPs based on prediction of cleavage and cross-links.Comparative analysis of chemical similarity methods for modular natural products with a hypothetical structure enumeration algorithm.Generate a bioactive natural product library by mining bacterial cytochrome P450 patterns.Omics-based natural product discovery and the lexicon of genome mining.Informatic analysis reveals Legionella as a source of novel natural products.Development of fungal cell factories for the production of secondary metabolites: Linking genomics and metabolism.Biological characterization of the hygrobafilomycin antibiotic JBIR-100 and bioinformatic insights into the hygrolide family of natural products.The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production.In silico methods for linking genes and secondary metabolites: The way forward.Complete Genome Sequence of Dietzia sp. Strain WMMA184, a Marine Coral-Associated Bacterium.Accessing chemical diversity from the uncultivated symbionts of small marine animals.Global analysis of prokaryotic tRNA-derived cyclodipeptide biosynthesis.Genome mining of Streptomyces scabrisporus NF3 reveals symbiotic features including genes related to plant interactions.Genome sequence of Streptomyces gilvigriseus MUSC 26T isolated from mangrove forest.Discovery of the Tyrobetaine Natural Products and Their Biosynthetic Gene Cluster via Metabologenomics.Draft Genome Sequence of Micromonospora sp. Strain WMMA1996, a Marine Sponge-Associated Bacterium.

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P2860

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

http://www.wikidata.org/entity/Q36676569

description

2015 nî lūn-bûn

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2015年の論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年論文

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2015年论文

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2015年论文

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2015年论文

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name

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Nucleic Acids Research

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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

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Andrew L H Webster

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Chad W Johnston

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Chris A Dejong

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Haoxin Li

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Morgan A Wyatt

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Nathan A Magarvey

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Philip N Rees

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P2860

Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases

The structure of ActVA-Orf6, a novel type of monooxygenase involved in actinorhodin biosynthesis.

The biosynthetic gene cluster for the polyketide immunosuppressant rapamycin

HMMER web server: interactive sequence similarity searching

MUSCLE: multiple sequence alignment with high accuracy and high throughput

SMART 7: recent updates to the protein domain annotation resource

BioJava: an open-source framework for bioinformatics in 2012

Predicting new molecular targets for known drugs

The tyrocidine biosynthesis operon of Bacillus brevis: complete nucleotide sequence and biochemical characterization of functional internal adenylation domains

Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

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9645-9662

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scholarly article

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10.1093/NAR/GKV1012

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20

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43

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Michael A Skinnider

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2015-10-05T00:00:00Z

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282605911

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26442528

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4787774

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