CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
about
Assigning and visualizing germline genes in antibody repertoiresHorizontal transfer of an adaptive chimeric photoreceptor from bryophytes to fernsThe "naked coral" hypothesis revisited--evidence for and against scleractinian monophylyInfluenza viruses with receptor-binding N1 neuraminidases occur sporadically in several lineages and show no attenuation in cell culture or mice.Concomitant emergence of the antisense protein gene of HIV-1 and of the pandemic.PSP: rapid identification of orthologous coding genes under positive selection across multiple closely related prokaryotic genomesPOTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genesExtreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.Functional variants of the melanocortin-4 receptor associated with the Odontoceti and Mysticeti suborders of cetaceansAn experimentally determined evolutionary model dramatically improves phylogenetic fit.The inherent mutational tolerance and antigenic evolvability of influenza hemagglutinin.An experimentally informed evolutionary model improves phylogenetic fit to divergent lactamase homologsNatural selection on coding and noncoding DNA sequences is associated with virulence genes in a plant pathogenic fungus.Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex.SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage.Distinctive patterns of evolution of the δ-globin gene (HBD) in primatesLineage-Specific Expansion of the Chalcone Synthase Gene Family in RosidsMolecular phylogeny of four homeobox genes from the purple sea star Pisaster ochraceus.Repeat-Associated Fission Yeast-Like Regional Centromeres in the Ascomycetous Budding Yeast Candida tropicalis.Phytochrome diversity in green plants and the origin of canonical plant phytochromesComparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets.Site-Specific Amino Acid Preferences Are Mostly Conserved in Two Closely Related Protein Homologs.Characterization and functional analysis of hypoxia-inducible factor HIF1α and its inhibitor HIF1αn in tilapia.Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in antsA Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi.Species- and Strain-Specific Adaptation of the HSP70 Super Family in Pathogenic TrypanosomatidsMutational effects on stability are largely conserved during protein evolution.Optimization strategies for fast detection of positive selection on phylogenetic trees.Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package.Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants.Inferring Trees.Maximum-Likelihood Tree Estimation Using Codon Substitution Models with Multiple Partitions.Trends in substitution models of molecular evolution.Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences.A Phylogenetic Codon Substitution Model for Antibody Lineages.Fast and accurate estimation of the covariance between pairwise maximum likelihood distances.Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants.ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution models.OrthoMaM v8: a database of orthologous exons and coding sequences for comparative genomics in mammals.
P2860
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P2860
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
description
2013 nî lūn-bûn
@nan
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
2013年论文
@zh
2013年论文
@zh-cn
name
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
@en
type
label
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
@en
prefLabel
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models.
@en
P2093
P2860
P356
P1476
CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models
@en
P2093
Manuel Gil
Maria Anisimova
Stefan Zoller
P2860
P304
P356
10.1093/MOLBEV/MST034
P577
2013-02-23T00:00:00Z