Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure
about
Identification of dynamical hinge points of the L1 ligase molecular switchMINAS--a database of Metal Ions in Nucleic AcidSSalt dependence of nucleic acid hairpin stabilitySolving nucleic acid structures by molecular replacement: examples from group II intron studiesStructural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitchesQuantifying the relationship between sequence and three-dimensional structure conservation in RNA.RCrane: semi-automated RNA model buildingVisualizing the ai5γ group IIB intronPredicting loop-helix tertiary structural contacts in RNA pseudoknots.Semiautomated model building for RNA crystallography using a directed rotameric approach.iPARTS: an improved tool of pairwise alignment of RNA tertiary structures.Discrete RNA libraries from pseudo-torsional spaceRNA approaches the B-form in stacked single strand dinucleotide contexts.SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction.Understanding the effects of carbocyclic sugars constrained to north and south conformations on RNA nanodesignLightweight object oriented structure analysis: tools for building tools to analyze molecular dynamics simulations.GeoPCA: a new tool for multivariate analysis of dihedral angles based on principal component geodesics.Mapping L1 ligase ribozyme conformational switch.Predicting structures and stabilities for H-type pseudoknots with interhelix loops.Coarse-graining RNA nanostructures for molecular dynamics simulations.iPARTS2: an improved tool for pairwise alignment of RNA tertiary structures, version 2.A new way to see RNA.Identification of a GUAAY Pentaloop Sequence Involved in a Novel RNA Loop-Helix Interaction.The influence of the local sequence environment on RNA loop structures.Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide-nucleotide interactions from direct coupling analysis.Co-evolution of quaternary organization and novel RNA tertiary interactions revealed in the crystal structure of a bacterial protein-RNA toxin-antitoxin system.Coarse-grained prediction of RNA loop structures.RNA structural motif recognition based on least-squares distance.Computing the conformational entropy for RNA folds.A structural analysis of the group II intron active site and implications for the spliceosome.The GANC tetraloop: a novel motif in the group IIC intron structure.SARA: a server for function annotation of RNA structures.R3D-BLAST2: an improved search tool for similar RNA 3D substructures.A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs.Analysis of stacking overlap in nucleic acid structures: algorithm and application.Geometric properties of nucleic acids with potential for autobuilding.
P2860
Q24615974-31B44E8D-EBF2-4F1E-9688-45804E39FA49Q24622320-98BF3CE2-F531-42E5-8B61-80D6C4F58198Q24650345-E88E796B-D540-4646-905A-0D08E8142E69Q27000781-65020DA6-0CAE-4036-AD4C-F648FB0D42C0Q27667553-1C6550E0-D4E8-4DD5-BCBF-E0F094BE5334Q30390338-9F6081DC-5406-4E90-80A5-8419B098FE5DQ30524008-A131987F-FB4C-4446-8A9C-1775F3FF03AAQ30571375-FEEB90E6-68A4-4C1E-BC90-ACA3E10D92AFQ33658469-9E9ECF93-1E37-4004-B5BD-99383FDFB19CQ33929383-406003DE-CCC7-478E-9ACE-F0DD6423764CQ33957542-79F8EED1-E6F4-4C56-B19D-3638113A9FB0Q34198733-E07FCF64-7D64-4042-A7AE-A748B48A8B86Q34497160-EBC63D95-1B4E-4A01-999D-748B9A92C9B7Q34505971-914BEF36-2E8A-4DD8-BEE2-56D5EEAA5FAAQ34578802-A7FDC2AD-92E0-418F-BBA5-BDD6541BE494Q35346073-35504B82-8313-404A-8C82-3EECB43AE1F5Q35740506-D20E3DD7-C4EA-4303-A760-DBB05AB66E0CQ36433589-97C19A65-3D4D-41A5-827C-7DB7CCA69347Q37142084-021B4AE2-C359-474A-810E-A985295EFB72Q37157205-E6C97D18-AF8B-4490-82DF-A441847EAF2FQ37182150-BFDAE3FE-A3DB-4C2A-88ED-FBC8AA1F6F3CQ37897683-6B0F5E18-CB21-4E46-AF44-76A996DE1E8AQ39258358-03D6B4E9-0494-4BD0-93B5-007DC15ADD75Q39744179-40BAC03F-B831-498C-97AF-65C285FF0536Q40950675-63BD0D21-A018-4604-A9C3-F9B0B1C6384FQ41009939-B2D9F4D7-5C00-4D5A-A56F-4E7B64123DACQ41329375-4A8785D7-A11B-4CD4-A897-C25B3D24F9B3Q42572182-CE9EB0BB-D47B-42C3-A920-2A5DA547F1ADQ42734024-CBF4C7D0-5014-4924-9256-D5D3A8EFE097Q42852645-0CA537B7-F4B8-49C6-B959-B47AE570DF50Q42935589-BFB4F00D-AB95-4C49-B07A-7D8F2DD446F8Q43103662-8BCF6D02-5E1D-4A62-85DC-B1A6BF9508F1Q47121344-5CBB11DE-9D2E-426F-B138-2CDD4F45BBCAQ49615824-E93A777D-1099-45D0-AE69-A76B3C015AF4Q51070510-BBF58789-0AC2-4DB2-95DD-CE05CD60C498Q55461053-B6225371-0CEF-4A41-840C-A65C83097AED
P2860
Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 27 June 2007
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
Evaluating and learning from R ...... presentation for RNA structure
@en
Evaluating and learning from R ...... resentation for RNA structure.
@nl
type
label
Evaluating and learning from R ...... presentation for RNA structure
@en
Evaluating and learning from R ...... resentation for RNA structure.
@nl
prefLabel
Evaluating and learning from R ...... presentation for RNA structure
@en
Evaluating and learning from R ...... resentation for RNA structure.
@nl
P2093
P2860
P1476
Evaluating and learning from R ...... presentation for RNA structure
@en
P2093
Anna Marie Pyle
Carlos M Duarte
Kevin S Keating
Leven M Wadley
P2860
P304
P356
10.1016/J.JMB.2007.06.058
P407
P577
2007-06-27T00:00:00Z