Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. - Test2 - elhamkhani - TriplyDB

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

http://www.wikidata.org/entity/Q37355764

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Plankton microorganisms coinciding with two consecutive mass fish kills in a newly reconstructed lake Uncultivated microbial eukaryotic diversity: a method to link ssu rRNA gene sequences with morphology Microbial Community Patterns Associated with Automated Teller Machine Keypads in New York City The taxonomic significance of species that have only been observed once: the genus Gymnodinium (Dinoflagellata) as an example First insight into dead wood protistan diversity: a molecular sampling of bright-spored Myxomycetes (Amoebozoa, slime-moulds) in decaying beech logs.Effect of oxygen minimum zone formation on communities of marine protists.Morphological, ultrastructural, and molecular characterization of Euplotidium rosati n. sp. (Ciliophora, Euplotida) from Guam.Morphological Description and Molecular Phylogeny of Two Species of Levicoleps (Ciliophora, Prostomatida), L. taehwae nov. spec. and L. biwae jejuensis nov. subspec., collected in Korea.Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean.Mapping the protistan 'rare biosphere'.Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean.Investigating microbial eukaryotic diversity from a global census: insights from a comparison of pyrotag and full-length sequences of 18S rRNA genes Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.Rapid shifts in the structure and composition of a protistan assemblage during bottle incubations affect estimates of total protistan species richness.Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France.Protist diversity in suboxic and sulfidic waters of the Black Sea.Two decades of describing the unseen majority of aquatic microbial diversity.Comparing the hyper-variable V4 and V9 regions of the small subunit rDNA for assessment of ciliate environmental diversity.Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain).Different biogeographic patterns of prokaryotes and microbial eukaryotes in epilithic biofilms.MOTUs, Morphology, and Biodiversity Estimation: A Case Study Using Nematodes of the Suborder Criconematina and a Conserved 18S DNA Barcode.Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study.Exploring slime mould diversity in high-altitude forests and grasslands by environmental RNA analysis.Combined Culture-Based and Culture-Independent Approaches Provide Insights into Diversity of Jakobids, an Extremely Plesiomorphic Eukaryotic Lineage Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes.General patterns of diversity in major marine microeukaryote lineages Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity New haptophyte lineages and multiple independent colonizations of freshwater ecosystems.Diversity and distributional patterns of ciliates in Guaymas Basin hydrothermal vent sediments.Abundance and novel lineages of thraustochytrids in Hawaiian waters.Phytoplankton diversity and community composition along the estuarine gradient of a temperate macrotidal ecosystem: combined morphological and molecular approaches Marine bacterial, archaeal and protistan association networks reveal ecological linkages.SSU rDNA sequence diversity and seasonally differentiated distribution of nanoplanktonic ciliates in neritic Bohai and Yellow Seas as revealed by T-RFLP Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (radiolarians) assessed by high-throughput sequencing High diversity of protistan plankton communities in remote high mountain lakes in the European Alps and the Himalayan mountains.Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds.Evidence for an active rare biosphere within freshwater protists community.Bioinformatic Amplicon Read Processing Strategies Strongly Affect Eukaryotic Diversity and the Taxonomic Composition of Communities.Kinetoplastid flagellates overlooked by universal primers dominate in the oxygenated hypolimnion of Lake Biwa, Japan.An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages.

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Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

http://www.wikidata.org/entity/Q37355764

description

article científic

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article scientifique

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articolo scientifico

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artigo científico

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bilimsel makale

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scientific article published on 10 July 2009

@en

vedecký článok

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vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

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name

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

@en

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

@nl

type

label

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

@en

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

@nl

prefLabel

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

@en

Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

@nl

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Applied and Environmental Microbiology

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Defining DNA-based operational taxonomic units for microbial-eukaryote ecology.

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P2093

Adriane C Jones

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Astrid Schnetzer

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David A Caron

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Dawn M Moran

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Mark R Dennett

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Peter D Countway

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Pratik Savai

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Rebecca J Gast

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Stefanie D Moorthi

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P2860

Phylogenomics reshuffles the eukaryotic supergroups

The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Molecular comparisons of freshwater and marine isolates of the same morphospecies of heterotrophic flagellates

The promise of a DNA taxonomy

Ebriid phylogeny and the expansion of the Cercozoa

Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems

Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata

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5797-5808

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scholarly article

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10.1128/AEM.00298-09

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18

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75

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2009-07-10T00:00:00Z

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19592529

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2747860

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