Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
about
Recovering full-length viral genomes from metagenomesMetagenomic survey for viruses in Western Arctic caribou, Alaska, through iterative assembly of taxonomic unitsRecovering complete and draft population genomes from metagenome datasetsMarine and giant viruses as indicators of a marine microbial community in a riverine systemFragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity CalculationsriboFrame: An Improved Method for Microbial Taxonomy Profiling from Non-Targeted MetagenomicsPooled assembly of marine metagenomic datasets: enriching annotation through chimerism.An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing dataA viral metagenomic approach on a non-metagenomic experiment: Mining next generation sequencing datasets from pig DNA identified several porcine parvoviruses for a retrospective evaluation of viral infections.Assembling metagenomes, one community at a time.Genomic characteristics and environmental distributions of the uncultivated Far-T4 phagesEvaluation of viral genome assembly and diversity estimation in deep metagenomes.SuRankCo: supervised ranking of contigs in de novo assembliesCombining metagenomics, metatranscriptomics and viromics to explore novel microbial interactions: towards a systems-level understanding of human microbiome.Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation.Genome-wide identification and characterization of reference genes with different transcript abundances for Streptomyces coelicolor.Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses.Virome Assembly and Annotation: A Surprise in the Namib Desert.Metagenomic Sequencing for Surveillance of Food- and Waterborne Viral Diseases.VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic dataUsing metagenomics to investigate human and environmental resistomes.Recent advances in sequence assembly: principles and applications.Assessing the Impact of Assemblers on Virus Detection in a De Novo Metagenomic Analysis Pipeline.Survey of (Meta)genomic Approaches for Understanding Microbial Community Dynamics.HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts.Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.Direct sequencing of human gut virome fractions obtained by flow cytometry.Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversityVirGenA: a reference-based assembler for variable viral genomes.FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data.Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.Overview of Virus Metagenomic Classification Methods and Their Biological Applications.A Statistical Approach to Correcting Cross-Annotations in a Metagenomic Functional Profile Generated by Short Reads.Metagenomic insights into diazotrophic communities across Arctic glacier forefields
P2860
Q26781533-2DAC55DC-8EFB-42CC-A4A8-20BF1FA7F6F6Q27314719-5065FA13-8929-4C6D-B21B-E347EE54E6B1Q28077819-CFAE97CE-D90F-4B8E-AD9A-CE91BEA625F2Q28583278-8443C087-2394-4908-9EA6-9F843CE8BC5FQ28607221-E5A1CFE1-47F0-4980-A380-9ABB4B202CCBQ28607426-8EBF91B2-9E80-4120-B737-2EB2D3E6F3C8Q30859209-D1C62970-22DC-41EE-A463-CAB5DF52218BQ30884356-116FDD01-AE24-4E30-A2BC-AB1BB3CC63D5Q33852975-BB4A0DCF-D1E3-4D83-AB86-E5520649E876Q33886672-1C8F9593-D723-4181-9B96-76A9120F8D9CQ35179628-82F428AD-D94C-4BA6-AE3E-02CAAAA6D236Q35434453-085FEBB7-C80F-45A8-A8C6-69346883F7F8Q35725209-1F7D782A-0880-4E81-B85D-A5B9A93D76B3Q35794069-55FB8FBC-CCE4-44F4-AFF9-BFDF7EA6FBABQ36068973-2BC1F3B0-6C7F-4B1A-966F-A189B2231047Q36176703-C8A584E8-1BE7-42AA-AD29-DB2286A1D6AAQ36242137-CFC77AEE-D656-4D97-B25D-EB1C1554F35AQ37027669-E9E62C5D-96D0-41F6-8DEE-D2A1A735F40EQ37597885-4339CB83-6D68-4C2A-91EA-253218280E5AQ37642078-7B18DB67-17DE-470A-9ED2-47C2A0197DC8Q38690628-F52C04BB-6122-4E6E-9B35-DDE6059A5945Q38695914-08DA9320-2FB8-4C10-9A29-EF08946AB763Q38814575-4434191F-3C57-4BCC-800C-822E8ED45AD6Q38834525-29D32236-13B4-4F54-BCA8-70D1DAC80E6EQ38985658-1E78C1A2-9D05-49F2-BF66-45667B8981ECQ39634425-1240C1AA-2605-4BB2-A6A7-31EDC92C8942Q40065742-E9D5A0AC-90BD-4F3B-A338-D92C1FAF2487Q41256581-314702D4-CF03-4BE9-A6D6-C42EF38602A3Q41694480-DEC0119F-4A98-4786-AB60-53FB0D495EABQ41926544-BA9800E5-BFB6-4BA7-9B06-D5F0145DDA6BQ47552694-484618F1-DE8F-4BBA-AE43-60BB252640A6Q53278226-A86B4708-8B6A-4445-BD6E-D9BE8CDF1158Q54217638-5562EE34-449C-4758-B737-C9ED5D555249Q55031240-4C6EFF27-2A4E-4C0E-BCEF-563C0EF09923Q56895886-80EDE05D-37B8-49E8-A228-1C0D6ED3C9AA
P2860
Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 18 January 2014
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
Comparison of different assemb ...... enomic communities in the gut.
@en
Comparison of different assemb ...... enomic communities in the gut.
@nl
type
label
Comparison of different assemb ...... enomic communities in the gut.
@en
Comparison of different assemb ...... enomic communities in the gut.
@nl
prefLabel
Comparison of different assemb ...... enomic communities in the gut.
@en
Comparison of different assemb ...... enomic communities in the gut.
@nl
P2860
P50
P356
P1433
P1476
Comparison of different assemb ...... genomic communities in the gut
@en
P2093
Jorge F Vázquez-Castellanos
Miguel Pignatelli
P2860
P356
10.1186/1471-2164-15-37
P407
P577
2014-01-18T00:00:00Z