Revisiting amino acid substitution matrices for identifying distantly related proteins. - Test2 - elhamkhani - TriplyDB

Revisiting amino acid substitution matrices for identifying distantly related proteins.

Revisiting amino acid substitution matrices for identifying distantly related proteins.

http://www.wikidata.org/entity/Q37523936

about

Protein sequence-similarity search acceleration using a heuristic algorithm with a sensitive matrix.Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance.SubVis: an interactive R package for exploring the effects of multiple substitution matrices on pairwise sequence alignment Tracking difference in gene expression in a time-course experiment using gene set enrichment analysis.Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix ALP & FALP: C++ libraries for pairwise local alignment E-values Fold-specific sequence scoring improves protein sequence matching.FAMSA: Fast and accurate multiple sequence alignment of huge protein families A simple method to control over-alignment in the MAFFT multiple sequence alignment program.A weighted string kernel for protein fold recognition GASS: identifying enzyme active sites with genetic algorithms.Derivative-free neural network for optimizing the scoring functions associated with dynamic programming of pairwise-profile alignment.

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P2860

Revisiting amino acid substitution matrices for identifying distantly related proteins.

http://www.wikidata.org/entity/Q37523936

description

2013 nî lūn-bûn

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name

Revisiting amino acid substitution matrices for identifying distantly related proteins.

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Revisiting amino acid substitution matrices for identifying distantly related proteins.

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Revisiting amino acid substitution matrices for identifying distantly related proteins.

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Revisiting amino acid substitution matrices for identifying distantly related proteins.

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Revisiting amino acid substitution matrices for identifying distantly related proteins.

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Revisiting amino acid substitution matrices for identifying distantly related proteins.

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Revisiting amino acid substitution matrices for identifying distantly related proteins

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Kazunori Yamada

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P2860

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Amino acid substitution matrices from protein blocks

Sequence context-specific profiles for homology searching

Searching protein structure databases with DaliLite v.3

Discriminative modelling of context-specific amino acid substitution probabilities

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

CD-HIT: accelerated for clustering the next-generation sequencing data

Data growth and its impact on the SCOP database: new developments

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317-325

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scholarly article

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10.1093/BIOINFORMATICS/BTT694

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3

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