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A composite score for predicting errors in protein structure modelsA Novel Family of Soluble Minimal Scaffolds Provides Structural Insight into the Catalytic Domains of Integral Membrane MetallopeptidasesOn the demultiplexing of chromosome capture conformation dataRefinement of protein structures by iterative comparative modeling and CryoEM density fittingA kernel for open source drug discovery in tropical diseasesTarget prediction for an open access set of compounds active against Mycobacterium tuberculosisLigand-target prediction by structural network biology using nAnnoLyzeRelease of 50 new, drug-like compounds and their computational target predictions for open source anti-tubercular drug discoveryOpen Source Research — the Power of UsComparative protein structure modeling using ModellerReliability of assessment of protein structure prediction methods.EVA: Evaluation of protein structure prediction servers.Tools for comparative protein structure modeling and analysisMODBASE, a database of annotated comparative protein structure models, and associated resources.Alignment of protein sequences by their profilesAccuracy of sequence alignment and fold assessment using reduced amino acid alphabets.Localization of binding sites in protein structures by optimization of a composite scoring functionDBAli tools: mining the protein structure spaceThe AnnoLite and AnnoLyze programs for comparative annotation of protein structures.Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs.Alignment of multiple protein structures based on sequence and structure features.Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae.Restraint-based three-dimensional modeling of genomes and genomic domains.Characterization of protein hubs by inferring interacting motifs from protein interactions.Prediction of enzyme function by combining sequence similarity and protein interactions.Detecting remotely related proteins by their interactions and sequence similarityBridging the resolution gap in structural modeling of 3D genome organization.N-glycosylation efficiency is determined by the distance to the C-terminus and the amino acid preceding an Asn-Ser-Thr sequonGenome structure determination via 3C-based data integration by the Integrative Modeling Platform.Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.Impact of Fgd1 and ddn diversity in Mycobacterium tuberculosis complex on in vitro susceptibility to PA-824.The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer.Chromatin and RNA Maps Reveal Regulatory Long Noncoding RNAs in Mouse.Protein translocation into peroxisomes by ring-shaped import receptors.Outcome of the First wwPDB Hybrid/Integrative Methods Task Force WorkshopModLink+: improving fold recognition by using protein-protein interactionsWhole-genome sequencing for rapid susceptibility testing of M. tuberculosis.The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation
P50
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P50
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Marc A Marti-Renom
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P1053
A-1836-2010
P106
P21
P2456
P31
P3829
P496
0000-0002-0151-4279