A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase.
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CHARMM: the biomolecular simulation programThe association of tetrameric acetylcholinesterase with ColQ tail: a block normal mode analysis.WEBnm@: a web application for normal mode analyses of proteinsBridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained ModelsChanges in dynamics upon oligomerization regulate substrate binding and allostery in amino acid kinase family membersAllosteric communication in myosin V: from small conformational changes to large directed movementsMechanochemical coupling in the myosin motor domain. II. Analysis of critical residuesInsight into the structure, dynamics and the unfolding property of amylosucrases: implications of rational engineering on thermostabilityElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacementMaking ATP.Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca²⁺-ATPase.Method for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration.Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.Application of elastic network models to proteins in the crystalline state.Iterative cluster-NMA: A tool for generating conformational transitions in proteins.Transforming binding affinities from three dimensions to two with application to cadherin clustering.RNA polymerase II flexibility during translocation from normal mode analysis.Conformational preference of ChaK1 binding peptides: a molecular dynamics study.Protein structural variation in computational models and crystallographic data.Structure-based predictive models for allosteric hot spots.On the conservation of the slow conformational dynamics within the amino acid kinase family: NAGK the paradigm.Prediction of protein motions from amino acid sequence and its application to protein-protein interactionNormal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.Simulation of F-actin filaments of several microns.Transconformations of the SERCA1 Ca-ATPase: a normal mode study.Gating gramicidin channels in lipid bilayers: reaction coordinates and the mechanism of dissociation.Analysis of functional motions in Brownian molecular machines with an efficient block normal mode approach: myosin-II and Ca2+ -ATPase.Anion pathway and potential energy profiles along curvilinear bacterial ClC Cl- pores: electrostatic effects of charged residuesHow does protein architecture facilitate the transduction of ATP chemical-bond energy into mechanical work? The cases of nitrogenase and ATP binding-cassette proteins.Normal mode analysis suggests a quaternary twist model for the nicotinic receptor gating mechanismThe role of shape in determining molecular motions.Comparison of mode analyses at different resolutions applied to nucleic acid systems.Coarse-grained normal mode analysis in structural biology.ΔΔPT: a comprehensive toolbox for the analysis of protein motionA natural coarse graining for simulating large biomolecular motionNew advances in normal mode analysis of supermolecular complexes and applications to structural refinementConstraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh.Deciphering the mismatch recognition cycle in MutS and MSH2-MSH6 using normal-mode analysis.Simulation and Theory of Antibody Binding to Crowded Antigen-Covered Surfaces.KOSMOS: a universal morph server for nucleic acids, proteins and their complexes.
P2860
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P2860
A coarse-grained normal mode approach for macromolecules: an efficient implementation and application to Ca(2+)-ATPase.
description
2002 nî lūn-bûn
@nan
2002年の論文
@ja
2002年論文
@yue
2002年論文
@zh-hant
2002年論文
@zh-hk
2002年論文
@zh-mo
2002年論文
@zh-tw
2002年论文
@wuu
2002年论文
@zh
2002年论文
@zh-cn
name
A coarse-grained normal mode a ...... application to Ca(2+)-ATPase.
@en
type
label
A coarse-grained normal mode a ...... application to Ca(2+)-ATPase.
@en
prefLabel
A coarse-grained normal mode a ...... application to Ca(2+)-ATPase.
@en
P2860
P1433
P1476
A coarse-grained normal mode a ...... application to Ca(2+)-ATPase.
@en
P2093
P2860
P304
P356
10.1016/S0006-3495(02)75257-0
P407
P577
2002-11-01T00:00:00Z