Comparative functional genomics of the fission yeastsClustering and conservation patterns of human microRNAsAssigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elementsIntAct: an open source molecular interaction databaseRepTar: a database of predicted cellular targets of host and viral miRNAsSmall RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulenceMolecular basis for expression of common and rare fragile sitesA survey of small RNA-encoding genes in Escherichia coliRelative predicted protein levels of functionally associated proteins are conserved across organismsAb initio prediction of transcription factor targets using structural knowledge.A dynamic view of domain-motif interactions.Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function.How reliable are experimental protein-protein interaction data?A novel Bayesian DNA motif comparison method for clustering and retrievalStochastic analysis of the SOS response in Escherichia coli.Cytomegalovirus microRNAs facilitate persistent virus infection in salivary glands.Legionella pneumophila 6S RNA optimizes intracellular multiplication.Modularity and directionality in genetic interaction maps.Reduced polymorphism in domains involved in protein-protein interactions.Host immune system gene targeting by a viral miRNAIn vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III.Characterization and prediction of protein-protein interactions within and between complexes.Insights from MHC-bound peptides.Evolutionary conservation of domain-domain interactions.A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs.Chromosomal organization is shaped by the transcription regulatory network.Built-in loops allow versatility in domain-domain interactions: lessons from self-interacting domains.Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction.Integration of Bacterial Small RNAs in Regulatory Networks.Competition between small RNAs: a quantitative view.Conserved sequence elements associated with exon skipping.Global regulation of transcription by a small RNA: a quantitative view.Detection of regulatory circuits by integrating the cellular networks of protein-protein interactions and transcription regulation.Auxiliary tRNAs: large-scale analysis of tRNA genes reveals patterns of tRNA repertoire dynamics.Interactions between distant ceRNAs in regulatory networksHierarchy of sequence-dependent features associated with prokaryotic translationA functional selection model explains evolutionary robustness despite plasticity in regulatory networks.Regulation of gene expression by small non-coding RNAs: a quantitative view.Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.Global Mapping of Small RNA-Target Interactions in Bacteria.
P50
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P50
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Principal Investigator in the Faculty of Medicine The Hebrew University of Jerusalem
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