Base Flipping in a GCGC Containing DNA Dodecamer: A Comparative Study of the Performance of the Nucleic Acid Force Fields, CHARMM, AMBER, and BMS.
about
Free energy landscape and transition pathways from Watson-Crick to Hoogsteen base pairing in free duplex DNARecent Developments and Applications of the CHARMM force fieldsAn Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent ApplicationsInduced Polarization Influences the Fundamental Forces in DNA Base Flipping.Characterizing structural transitions using localized free energy landscape analysisAn Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies.The effect of a G:T mispair on the dynamics of DNABase flipping free energy profiles for damaged and undamaged DNA.Molecular dynamics simulations of Factor Xa: insight into conformational transition of its binding subsites.Hidden Conformation Events in DNA Base Extrusions: A Generalized Ensemble Path Optimization and Equilibrium Simulation Study.Free energy profiles of base flipping in intercalative polycyclic aromatic hydrocarbon-damaged DNA duplexes: energetic and structural relationships to nucleotide excision repair susceptibilityOptimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.All-atom polarizable force field for DNA based on the classical Drude oscillator modelBase flip in DNA studied by molecular dynamics simulationsof differently-oxidized forms of methyl-CytosineMolecular dynamics study of the role of the spine of hydration in DNA A-tracts in determining nucleosome occupancy.Decoding the conformation-linked functional properties of nucleic acids by the use of computational tools.Evaluating nonpolarizable nucleic acid force fields: a systematic comparison of the nucleobases hydration free energies and chloroform-to-water partition coefficients.
P2860
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P2860
Base Flipping in a GCGC Containing DNA Dodecamer: A Comparative Study of the Performance of the Nucleic Acid Force Fields, CHARMM, AMBER, and BMS.
description
2006 nî lūn-bûn
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2006年の論文
@ja
2006年学术文章
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2006年学术文章
@zh
2006年学术文章
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2006年学术文章
@zh-hans
2006年学术文章
@zh-my
2006年学术文章
@zh-sg
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2006年學術文章
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name
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@en
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@nl
type
label
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@en
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@nl
prefLabel
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@en
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@nl
P356
P1476
Base Flipping in a GCGC Contai ...... ields, CHARMM, AMBER, and BMS.
@en
P2093
U Deva Priyakumar
P304
P356
10.1021/CT0501957
P577
2006-01-01T00:00:00Z