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Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathwaysThe free energy landscape of small molecule unbindingDiminished self-chaperoning activity of the DeltaF508 mutant of CFTR results in protein misfoldingEmergent ultra-long-range interactions between active particles in hybrid active-inactive systemsForce-dependent switch in protein unfolding pathways and transition-state movements.Effects of surface tethering on protein folding mechanisms.Non-native interactions, effective contact order, and protein folding: a mutational investigation with the energetically frustrated hydrophobic model.Topological determinants of protein folding.Molecular dynamics simulations of protein folding from the transition state.Multiple protein folding nuclei and the transition state ensemble in two-state proteins.On the polymer physics origins of protein folding thermodynamics.Systematic determination of order parameters for chain dynamics using diffusion maps.Sampling the multiple folding mechanisms of Trp-cage in explicit solventChemical, physical, and theoretical kinetics of an ultrafast folding protein.Analysis of the free-energy surface of proteins from reversible folding simulations.Interplay between pleiotropy and secondary selection determines rise and fall of mutators in stress response.Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails.Simulations of the role of water in the protein-folding mechanism.Reactive flux and folding pathways in network models of coarse-grained protein dynamics.Phi-value analysis by molecular dynamics simulations of reversible folding.Reaction coordinates and rates from transition paths.Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein GStructured pathway across the transition state for peptide folding revealed by molecular dynamics simulationsThe ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation.Drying-induced hydrophobic polymer collapse.Recent developments in methods for identifying reaction coordinates.Protein folding by distributed computing and the denatured state ensemble.Why do protein folding rates correlate with metrics of native topology?Free energy of conformational transition paths in biomolecules: the string method and its application to myosin VI.Constrained proper sampling of conformations of transition state ensemble of protein folding.Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reductionLandscape approaches for determining the ensemble of folding transition states: success and failure hinge on the degree of frustration.Simulating disorder-order transitions in molecular recognition of unstructured proteins: where folding meets bindingFolding pathway of a lattice model for proteins.Understanding ensemble protein folding at atomic detailThe social network (of protein conformations)Optimal reaction coordinate as a biomarker for the dynamics of recovery from kidney transplant.Complex network analysis of free-energy landscapesReconstructing folding energy landscapes from splitting probability analysis of single-molecule trajectories.Reaction coordinates of biomolecular isomerization
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P2860
description
article
@en
im Januar 1998 veröffentlichter wissenschaftlicher Artikel
@de
wetenschappelijk artikel
@nl
наукова стаття, опублікована в січні 1998
@uk
name
On the transition coordinate for protein folding
@en
On the transition coordinate for protein folding
@nl
type
label
On the transition coordinate for protein folding
@en
On the transition coordinate for protein folding
@nl
prefLabel
On the transition coordinate for protein folding
@en
On the transition coordinate for protein folding
@nl
P2093
P2860
P356
P1476
On the transition coordinate for protein folding
@en
P2093
Alexander Yu. Grosberg
Eugene S. Shakhnovich
Toyoichi Tanaka
Vijay S. Pande
P2860
P304
P356
10.1063/1.475393
P407
P577
1998-01-01T00:00:00Z