TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

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TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

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scientific article published on 05 September 2018

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наукова стаття, опублікована у вересні 2018

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TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

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TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

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TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

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P1476

TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution

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Joshua J Hamilton

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Katherine D McMahon

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Robin R Rohwer

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Ryan J Newton

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P2860

QIIME allows analysis of high-throughput community sequencing data

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

Basic local alignment search tool

RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

ARB: a software environment for sequence data

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

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scholarly article

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10.1128/MSPHERE.00327-18

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English

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2018-09-05T00:00:00Z

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30185512

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6126143

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