about
The viral and cellular microRNA targetome in lymphoblastoid cell linesViral microRNA targetome of KSHV-infected primary effusion lymphoma cell linesA viral microRNA functions as an orthologue of cellular miR-155Computational analysis of core promoters in the Drosophila genomeRecognition of unknown conserved alternatively spliced exons.FMRP targets distinct mRNA sequence elements to regulate protein expressionGene expression divergence recapitulates the developmental hourglass modelA paired-end sequencing strategy to map the complex landscape of transcription initiation.Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits.Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.Optimized mixed Markov models for motif identification.Detecting actively translated open reading frames in ribosome profiling data.CSEQ-SIMULATOR: A DATA SIMULATOR FOR CLIP-SEQ EXPERIMENTS.Spatial preferences of microRNA targets in 3' untranslated regions.Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing eventsExtraction and comparison of gene expression patterns from 2D RNA in situ hybridization images.Promoting developmental transcription.Global target mRNA specification and regulation by the RNA-binding protein ZFP36.Modeling the evolution of regulatory elements by simultaneous detection and alignment with phylogenetic pair HMMs.Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin levelAssessing the utility of thermodynamic features for microRNA target prediction under relaxed seed and no conservation requirements.Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targetsAutomatic annotation of spatial expression patterns via sparse Bayesian factor models.PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data.An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery.Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approachThe MTE, a new core promoter element for transcription by RNA polymerase II.Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification.The Drosophila Translational Control Element (TCE) is required for high-level transcription of many genes that are specifically expressed in testes.A microfluidic device and computational platform for high-throughput live imaging of gene expression.Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells.Informative priors based on transcription factor structural class improve de novo motif discovery.Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.Fine time course expression analysis identifies cascades of activation and repression and maps a putative regulator of mammalian sex determination.Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategyHuman promoters are intrinsically directional.Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stabilityHigh-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.
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P50
description
onderzoeker
@nl
researcher, ORCID id # 0000-0002-0881-3116
@en
name
Uwe Ohler
@ast
Uwe Ohler
@en
Uwe Ohler
@es
Uwe Ohler
@nl
type
label
Uwe Ohler
@ast
Uwe Ohler
@en
Uwe Ohler
@es
Uwe Ohler
@nl
prefLabel
Uwe Ohler
@ast
Uwe Ohler
@en
Uwe Ohler
@es
Uwe Ohler
@nl
P106
P31
P496
0000-0002-0881-3116