about
Ubiquitin is a novel substrate for human insulin-degrading enzymeModeling large regions in proteins: applications to loops, termini, and foldingThymosin beta 4 binds actin in an extended conformation and contacts both the barbed and pointed endsDifferences in the folding transition state of ubiquitin indicated by phi and psi analysesOn the precision of experimentally determined protein folding rates and phi-valuesLoss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculationsOn docking, scoring and assessing protein-DNA complexes in a rigid-body frameworkDiscovering RNA-protein interactome by using chemical context profiling of the RNA-protein interfaceA Probabilistic Graphical Model for Ab Initio FoldingDe novo prediction of protein folding pathways and structure using the principle of sequential stabilizationA probabilistic and continuous model of protein conformational space for template-free modelingOutcome of a workshop on applications of protein models in biomedical researchUnderstanding protein hydrogen bond formation with kinetic H/D amide isotope effects.Mimicking the folding pathway to improve homology-free protein structure prediction.Protein structure prediction enhanced with evolutionary diversity: SPEED.Aromatic claw: A new fold with high aromatic content that evades structural prediction.Contribution of hydrogen bonding to protein stability estimated from isotope effects.Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins.Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.Statistical coil model of the unfolded state: resolving the reconciliation problem.Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.Protein vivisection reveals elusive intermediates in foldingExtended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.Modeling the hydration layer around proteins: HyPred.TULIPs: tunable, light-controlled interacting protein tags for cell biology.Discerning the structure and energy of multiple transition states in protein folding using psi-analysis.Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy.Benchmarking all-atom simulations using hydrogen exchange.RNA folding: models and perspectives.Automated real-space refinement of protein structures using a realistic backbone move set.Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scatteringRandom coil negative control reproduces the discrepancy between scattering and FRET measurements of denatured protein dimensions.Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozymeTranscriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch.Probing the folding transition state of ubiquitin mutants by temperature-jump-induced downhill unfolding.The amino-terminal helix modulates light-activated conformational changes in AsLOV2.The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized).Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures.Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.Methods for the accurate estimation of confidence intervals on protein folding phi-values
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description
researcher
@en
wetenschapper
@nl
հետազոտող
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name
Tobin R Sosnick
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Tobin R Sosnick
@en
Tobin R Sosnick
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Tobin R Sosnick
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type
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Tobin R Sosnick
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Tobin R Sosnick
@en
Tobin R Sosnick
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Tobin R Sosnick
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prefLabel
Tobin R Sosnick
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Tobin R Sosnick
@en
Tobin R Sosnick
@es
Tobin R Sosnick
@nl
P106
P31
P496
0000-0002-2871-7244