The 2013 Florida Atlantic Owls baseball team represents Florida Atlantic University in the sport of baseball for the 2013 college baseball season. The Owls compete in Division I of the National Collegiate Athletic Association (NCAA) and the Sun Belt Conference. They play their home games at FAU Baseball Stadium, on the university's Boca Raton, Florida campus. The team is coached by John McCormack, who is in his fifth season at Florida Atlantic.