Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding - Wikidata - thesis-toulmin - TriplyDB

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

http://www.wikidata.org/entity/Q24563684

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Complete probabilistic analysis of RNA shapes Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction Human mitochondrial thioredoxin reductase cDNA cloning, expression and genomic organization Base-stacking and base-pairing contributions into thermal stability of the DNA double helix.Mfold web server for nucleic acid folding and hybridization prediction Promoter region of the Escherichia coli O7-specific lipopolysaccharide gene cluster: structural and functional characterization of an upstream untranslated mRNA sequence Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots Design of multistable RNA molecules Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.Fast and reliable prediction of noncoding RNAs Comparative analysis of superintegrons: engineering extensive genetic diversity in the Vibrionaceae Novel non-coding RNAs in Dictyostelium discoideum and their expression during development Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure FOXL2 and BPES: mutational hotspots, phenotypic variability, and revision of the genotype-phenotype correlation Human BLCAP transcript: new editing events in normal and cancerous tissues Neutral evolution of mutational robustness Unifying evolutionary and thermodynamic information for RNA folding of multiple alignments Pfold: RNA secondary structure prediction using stochastic context-free grammars Profiled support vector machines for antisense oligonucleotide efficacy prediction Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization DINAMelt web server for nucleic acid melting prediction.Automatic detection of conserved RNA structure elements in complete RNA virus genomes Genetic determinants of Sindbis virus neuroinvasiveness A Viral Noncoding RNA Generated by cis-Element-Mediated Protection against 5'->3' RNA Decay Represses both Cap-Independent and Cap-Dependent Translation A posterioridesign of crystal contacts to improve the X-ray diffraction properties of a small RNA enzyme Specific Recognition of a Single-Stranded RNA Sequence by a Synthetic Antibody Fragment The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr RNA secondary structure analysis using RNAstructure Heteroplasmy in the mtDNA control region of sturgeon (Acipenser, Huso and Scaphirhynchus)Derivation of nearest-neighbor properties from data on nucleic acid oligomers. I. Simple sets of independent sequences and the influence of absent nearest neighbors.Pathogenic Yersinia species carry a novel, cold-inducible major cold shock protein tandem gene duplication producing both bicistronic and monocistronic mRNA.RNase-stable RNA: conformational parameters of the nucleic acid backbone for binding to RNase T1.Forced-unfolding and force-quench refolding of RNA hairpins.Incorporation of influenza A virus genome segments does not absolutely require wild-type sequences.Exploring ribozyme conformational changes with X-ray crystallography.Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides.Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model.trp RNA-binding attenuation protein-5' stem-loop RNA interaction is required for proper transcription attenuation control of the Bacillus subtilis trpEDCFBA operon.

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P2860

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

http://www.wikidata.org/entity/Q24563684

description

1994 nî lūn-bûn

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1994 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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1994 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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Coaxial stacking of helixes en ...... ves predictions of RNA folding

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Coaxial stacking of helixes en ...... ves predictions of RNA folding

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Coaxial stacking of helixes en ...... ves predictions of RNA folding

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Coaxial stacking of helixes en ...... ves predictions of RNA folding

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Coaxial stacking of helixes en ...... ves predictions of RNA folding

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PNAS.91.20.9218

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Proceedings of the National Academy of Sciences of the United States of America

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Coaxial stacking of helixes en ...... ves predictions of RNA folding

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A E Walter

http://www.w3.org/2001/XMLSchema#string

D H Mathews

http://www.w3.org/2001/XMLSchema#string

D H Turner

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J Kim

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M H Lyttle

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M Zuker

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P Müller

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P2860

On finding all suboptimal foldings of an RNA molecule

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

Improved free-energy parameters for predictions of RNA duplex stability

Three-dimensional model of the active site of the self-splicing rRNA precursor of Tetrahymena

DNA sequencing by primer walking with strings of contiguous hexamers.

Three-dimensional tertiary structure of yeast phenylalanine transfer RNA.

Structure of yeast phenylalanine tRNA at 3 A resolution.

Estimation of secondary structure in ribonucleic acids.

Improved predictions of secondary structures for RNA

Prevention of chain cleavage in the chemical synthesis of 2'-silylated oligoribonucleotides.

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9218-22

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scholarly article

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10.1073/PNAS.91.20.9218

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20

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91

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1994-09-27T00:00:00Z

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15675179

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7524072

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44783

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