A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions
about
Novel insights into eukaryotic γ-glutamyltranspeptidase 1 from the crystal structure of the glutamate-bound human enzymePrinciples and Overview of Sampling Methods for Modeling Macromolecular Structure and DynamicsPDZD7 and hearing loss: More than just a modifierInsights into cis-autoproteolysis reveal a reactive state formed through conformational rearrangementIncreasing Sequence Diversity with Flexible Backbone Protein Design: The Complete Redesign of a Protein Hydrophobic CoreIntegrated description of protein dynamics from room-temperature X-ray crystallography and NMRComputational Redesign of Thioredoxin Is Hypersensitive toward Minor Conformational Changes in the Backbone TemplatePredicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA MethodEnhancements to the Rosetta Energy Function Enable Improved Identification of Small Molecules that Inhibit Protein-Protein InteractionsMapping the Geometric Evolution of Protein Folding MotorBioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomersRealistic sampling of amino acid geometries for a multipolar polarizable force fieldCoupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand SpecificityA Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and DesignCombined covalent-electrostatic model of hydrogen bonding improves structure prediction with RosettaQuantification of the transferability of a designed protein specificity switch reveals extensive epistasis in molecular recognitionScientific benchmarks for guiding macromolecular energy function improvementPopulation shuffling between ground and high energy excited states.Databases, Repositories, and Other Data Resources in Structural Biology.Fitmunk: improving protein structures by accurate, automatic modeling of side-chain conformations.New insights into the interdependence between amino acid stereochemistry and protein structureProbing tertiary structure of proteins using single Trp mutations with circular dichroism at low temperature.Adaptability in protein structures: structural dynamics and implications in ligand design.Neighboring residue effects in terminally blocked dipeptides: implications for residual secondary structures in intrinsically unfolded/disordered proteins.Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures.Strength of a bifurcated H bond.Assessment of protein side-chain conformation prediction methods in different residue environments.Predicting the side-chain dihedral angle distributions of nonpolar, aromatic, and polar amino acids using hard sphere models.Improved packing of protein side chains with parallel ant colonies.A three dimensional visualisation approach to protein heavy-atom structure reconstructionThe impact of side-chain packing on protein docking refinement3d interaction homology: The structurally known rotamers of tyrosine derive from a surprisingly limited set of information-rich hydropathic interaction environments described by maps.Equilibrium transitions between side-chain conformations in leucine and isoleucine.Glutamine and Asparagine Side Chain Hyperconjugation-Induced Structurally Sensitive Vibrations.De novo protein conformational sampling using a probabilistic graphical model.An amino acid code to define a protein's tertiary packing surface.Mapping the intrinsically disordered properties of the flexible loop domain of Bcl-2: a molecular dynamics simulation study.Assessment of template-based modeling of protein structure in CASP11.Improving hybrid statistical and physical forcefields through local structure enumeration.Probing the minimal determinants of zinc binding with computational protein design
P2860
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P2860
A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions
description
2011 nî lūn-bûn
@nan
2011 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
A smoothed backbone-dependent ...... sity estimates and regressions
@ast
A smoothed backbone-dependent ...... sity estimates and regressions
@en
A smoothed backbone-dependent ...... sity estimates and regressions
@nl
type
label
A smoothed backbone-dependent ...... sity estimates and regressions
@ast
A smoothed backbone-dependent ...... sity estimates and regressions
@en
A smoothed backbone-dependent ...... sity estimates and regressions
@nl
prefLabel
A smoothed backbone-dependent ...... sity estimates and regressions
@ast
A smoothed backbone-dependent ...... sity estimates and regressions
@en
A smoothed backbone-dependent ...... sity estimates and regressions
@nl
P2860
P3181
P1433
P1476
A smoothed backbone-dependent ...... sity estimates and regressions
@en
P2093
Maxim V Shapovalov
P2860
P304
P3181
P356
10.1016/J.STR.2011.03.019
P407
P577
2011-06-01T00:00:00Z