Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania - Wikidata - thesis-toulmin - TriplyDB

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania

http://www.wikidata.org/entity/Q24611470

about

Genome of the avirulent human-infective trypanosome--Trypanosoma rangeli Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei Transcription: base J blocks the way Entering the era of bacterial epigenomics with single molecule real time DNA sequencing Drug resistance analysis by next generation sequencing in Leishmania Transcriptional termination in mammals: Stopping the RNA polymerase II juggernaut Depletion of UDP-Glucose and UDP-Galactose Using a Degron System Leads to Growth Cessation of Leishmania major Genome-wide mapping of 5-hydroxymethyluracil in the eukaryote parasite Leishmania Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea.Suppression of subtelomeric VSG switching by Trypanosoma brucei TRF requires its TTAGGG repeat-binding activity.Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax.A Chemical Probe Targets DNA 5-Formylcytosine Sites and Inhibits TDG Excision, Polymerases Bypass, and Gene Expression.Identification of the glucosyltransferase that converts hydroxymethyluracil to base J in the trypanosomatid genome.The epigenome of Trypanosoma brucei: a regulatory interface to an unconventional transcriptional machine Antigenic variation in African trypanosomes.Depletion of the RNA-binding protein RBP33 results in increased expression of silenced RNA polymerase II transcripts in Trypanosoma brucei.Quantitative mass spectrometry-based analysis of β-D-glucosyl-5-hydroxymethyluracil in genomic DNA of Trypanosoma brucei.Tb927.10.6900 encodes the glucosyltransferase involved in synthesis of base J in Trypanosoma brucei Cross-species genetic exchange between visceral and cutaneous strains of Leishmania in the sand fly vector.The transcriptome of Leishmania major in the axenic promastigote stage: transcript annotation and relative expression levels by RNA-seq.Genomic analysis of sequence-dependent DNA curvature in Leishmania.Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA.Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.Leishmania aethiopica field isolates bearing an endosymbiontic dsRNA virus induce pro-inflammatory cytokine response.Facile enzymatic synthesis of base J-containing oligodeoxyribonucleotides and an analysis of the impact of base J on DNA replication in cells.25 years of African trypanosome research: From description to molecular dissection and new drug discovery Histone H3 Variant Regulates RNA Polymerase II Transcription Termination and Dual Strand Transcription of siRNA Loci in Trypanosoma brucei Base J and H3.V Regulate Transcriptional Termination in Trypanosoma brucei.Molecular basis for 5-carboxycytosine recognition by RNA polymerase II elongation complex Serum Removal from Culture Induces Growth Arrest, Ploidy Alteration, Decrease in Infectivity and Differential Expression of Crucial Genes in Leishmania infantum Promastigotes.The structure and repertoire of small interfering RNAs in Leishmania (Viannia) braziliensis reveal diversification in the trypanosomatid RNAi pathway.Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.RNA polymerase II acts as a selective sensor for DNA lesions and endogenous DNA modifications TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.Base J represses genes at the end of polycistronic gene clusters in Leishmania major by promoting RNAP II termination Kinetoplastid-specific histone variant functions are conserved in Leishmania major.PPL2 translesion polymerase is essential for the completion of chromosomal DNA replication in the African trypanosome.DNA repair pathways in trypanosomatids: from DNA repair to drug resistance.Well-positioned nucleosomes punctuate polycistronic pol II transcription units and flank silent VSG gene arrays in Trypanosoma brucei.Chromatin modifications in trypanosomes due to stress.

P2860

Q21092269-AD7682AB-D853-4F99-BB62-E897D0379048 Q24489967-71F28CAD-D09D-405E-9FAE-1C81206770FD Q24629148-CD68B738-728D-4BD3-B3F5-1DE89C7703F5 Q24629701-2D408EFA-EC83-46C5-B3C5-0AED4FFEF8CA Q26851222-105CCA9D-6862-4D82-81EA-96652C259A99 Q28080059-345356EA-C854-463E-8008-A040DE9C742C Q28550611-F254FC2E-D962-4D80-AF72-6FBC73AAD4A2 Q28817830-F7922E8C-C46D-4E5A-BC00-84AFD604E537 Q30606355-751A4427-EF80-4C7F-88B5-BA770D6AEA11 Q30860113-47ED6031-4033-4746-9E93-AFF33D049C2B Q33556900-281D255E-9D94-41BE-9ED6-13F82CC2436F Q33686571-B0C46A5B-D783-487D-A77F-7F0E545295E3 Q33931238-1596D3EB-28B9-468B-B7E3-0D923DDEC82A Q34067812-CF46E2A1-70F3-4BBC-858B-EE3805A51701 Q34136433-A2F44D9C-F50C-42FC-8ECE-E2B306D1C917 Q34172631-23B1D991-9AB5-4AFF-AD19-A13EFD11473E Q34175560-975E7F5E-7785-469A-8776-AA34C945104D Q34389666-FF890F28-06F0-4AE1-B3D9-5017C23254EF Q34601558-6787BA1A-CA48-4377-B424-C27443C6DD37 Q34655388-7B249671-CAD4-48F5-AF72-7D9F58093810 Q34707000-69308953-6DE8-4D38-877E-B5CDDD79A9AA Q34787593-6BB310F7-9493-487E-997A-491EEEA28FFE Q35131187-1CEA39A7-9D62-4CD0-B676-18BE076674D4 Q35156850-6F5030CE-0011-4C01-A3F3-E4BE21D1E109 Q35213122-5A327AFA-CE69-46E9-8556-8151FDD23499 Q35875131-34978D2C-CF69-4E5A-9F3E-B6C6266F479D Q35900453-37E5C1DE-4823-4B55-89B4-73F5DAD089FC Q35900489-AF8E7217-2439-4958-AB76-1620998D34A1 Q35907869-C1AF88C7-37A3-4B89-ABDD-C41F79182C36 Q35951052-39CEC331-0EAB-44E0-BABB-B7CB3A90CE77 Q36565536-99EA997C-97E2-4347-8A54-E74F218D42DA Q36956570-FF7C85E6-612B-4D13-A111-299C28C1C5FF Q37174539-B0A9C661-2055-4420-87CD-22A594680347 Q37244379-4B617266-47C3-4D9F-9F8C-E2D717B0F130 Q37287378-E2C5E750-E53B-4490-86DB-A842BA88C12F Q37393340-28DA99DD-03AE-4658-A751-6B8364B1D2D8 Q37504432-8741903C-34EC-4587-BEA2-F0D9AEF971B5 Q37643441-813AFDB8-733B-499D-B4AA-9F805D19B922 Q37713544-4847BFE2-132D-45E8-9694-7648FC357B08 Q38075578-A49B455A-10E0-4C82-B45A-A28C4DB5DD86

P2860

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania

http://www.wikidata.org/entity/Q24611470

description

2012 nî lūn-bûn

@nan

2012 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի օգոստոսին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@ast

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@en

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@nl

type

label

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@ast

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@en

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@nl

prefLabel

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@ast

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@en

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@nl

P1433

Q24611470-A2872452-52DC-4489-873F-2226DF6BF233

P1476

Q24611470-F9DD55F7-E0F5-4D95-82DC-87BE19644DFA

P2093

Q24611470-0B36D100-43C7-48A1-90AB-934A55AF0C3C

Q24611470-22488A17-41CD-49A9-8632-5E410ED9B525

Q24611470-5D8D704E-E1A2-4AEC-AA33-5364548832C7

Q24611470-96CB5C69-8FC0-4420-A85F-5563716117DA

Q24611470-A89A76F5-76E1-46AA-8284-E9B944684BF7

Q24611470-C5196A3A-072D-4E2C-BEEE-AE78612BFE7B

Q24611470-D3498BDA-24F9-4DB0-8BDF-20B1B6D88C8E

Q24611470-D6E8D4BA-36EC-44BB-8026-E39D22FA4076

Q24611470-DD858149-A7E6-41F8-BCBA-E1FF04D81446

Q24611470-E6BE472C-96D1-4CD1-9C58-33DBDD7F3EEA

P2860

Q24611470-07DA6594-0F5A-4154-B8BD-E1D752F8D535

Q24611470-083C0D6F-DAF4-4F48-8B75-4FC446B0D7A0

Q24611470-08C3B632-3C49-4AFE-A1D7-EED0D6F92899

Q24611470-0D1543C6-AAB8-4B4B-8268-71006D77D997

Q24611470-1161A94B-A32A-4D87-876F-521C3F971184

Q24611470-23008151-A620-49CF-9DBA-D6A13B467753

Q24611470-234671C9-2A2E-4FFF-957D-62ADCF56F151

Q24611470-2B7C8AA1-2CCF-4BAA-B34C-74CDAA777A58

Q24611470-2FF7A2B5-D754-4C27-ABAD-1047EC9F64AB

Q24611470-301C8B54-0E53-4A62-B32E-680957E080E4

P304

Q24611470-55905A32-6D4C-47D3-82D2-68AF18D719AB

P31

Q24611470-BC2DAC2A-89C9-454F-901D-749CF3CAF93A

P356

Q24611470-AE97C140-B57A-4B70-A111-9170A1199119

P407

Q24611470-7BFD1931-C7CA-4403-BB78-5CB09F4FE1AB

P433

Q24611470-25529D0E-9EE8-4966-91E8-01768456F49A

P478

Q24611470-C684AED1-5014-40CE-BCA6-CF5DFD7109B8

P50

Q24611470-0EEAA1E5-986B-4D09-ABFD-4F081333AA98

Q24611470-86F86302-0F1D-4D44-81C4-094CA9029F9E

Q24611470-896CB019-B449-464F-AD86-9E1F07F25D88

Q24611470-A74DB34C-95FD-4725-BD0B-A206F842E326

Q24611470-B7A70AE8-5CA5-4907-AD46-CE3B3D746C7A

P577

Q24611470-1DAD16F4-2F43-48AD-8421-C6395A4F0748

P5875

Q24611470-4571FE5A-A775-4764-B09C-4451BC78B62D

P698

Q24611470-9134C303-39DC-4A71-AA3F-8CDEE8667ED6

P932

Q24611470-A0731BD9-1334-41E9-AC4E-4385CA63FAAC

P356

J.CELL.2012.07.030

P1433

P1476

Glucosylated hydroxymethylurac ...... onal readthrough in Leishmania

@en

P2093

Andrew Haydock

http://www.w3.org/2001/XMLSchema#string

Carol Farris

http://www.w3.org/2001/XMLSchema#string

Gowthaman Ramasamy

http://www.w3.org/2001/XMLSchema#string

Henri G A M van Luenen

http://www.w3.org/2001/XMLSchema#string

Ludo Pagie

http://www.w3.org/2001/XMLSchema#string

Marja Nieuwland

http://www.w3.org/2001/XMLSchema#string

Pankaj Tripathi

http://www.w3.org/2001/XMLSchema#string

Piet Borst

http://www.w3.org/2001/XMLSchema#string

Ron M Kerkhoven

http://www.w3.org/2001/XMLSchema#string

Saara Vainio

http://www.w3.org/2001/XMLSchema#string

P2860

Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids

Base J: Discovery, Biosynthesis, and Possible Functions

The genome of the kinetoplastid parasite, Leishmania major

The Genome of the African Trypanosome Trypanosoma brucei

The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

Transcriptional interference--a crash course

Fast and accurate short read alignment with Burrows-Wheeler transform

Formation of linear inverted repeat amplicons following targeting of an essential gene in Leishmania.

P304

909-21

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1016/J.CELL.2012.07.030

http://www.w3.org/2001/XMLSchema#string

P407

P433

5

http://www.w3.org/2001/XMLSchema#string

P478

150

http://www.w3.org/2001/XMLSchema#string

P50

Anastassis Perrakis

Bas van Steensel

Paul-Andre Genest

P577

2012-08-31T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

230781886

http://www.w3.org/2001/XMLSchema#string

P698

22939620

http://www.w3.org/2001/XMLSchema#string

P932

3684241

http://www.w3.org/2001/XMLSchema#string