BioJava: an open-source framework for bioinformatics in 2012 - Wikidata - thesis-toulmin - TriplyDB

BioJava: an open-source framework for bioinformatics in 2012

BioJava: an open-source framework for bioinformatics in 2012

http://www.wikidata.org/entity/Q24630147

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Detection of circular permutations within protein structures using CE-CP Applications of the InChI in cheminformatics with the CDK and Bioclipse BioJS: an open source standard for biological visualisation - its status in 2014 Ten simple rules for the open development of scientific software Tools and data services registry: a community effort to document bioinformatics resources Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimens The MI bundle: enabling network and structural biology in genome visualization tools.bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming A molecular fragment cheminformatics roadmap for mesoscopic simulation Improving protein-ligand binding site prediction accuracy by classification of inner pocket points using local features Community-driven development for computational biology at Sprints, Hackathons and Codefests The RCSB Protein Data Bank: views of structural biology for basic and applied research and education Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective JBioWH: an open-source Java framework for bioinformatics data integration Genomic charting of ribosomally synthesized natural product chemical space facilitates targeted mining JSBML 1.0: providing a smorgasbord of options to encode systems biology models.The impact of structural diversity and parameterization on maps of the protein universe Cloud4Psi: cloud computing for 3D protein structure similarity searching.TAPO: A combined method for the identification of tandem repeats in protein structures.HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering.ProSAT+: visualizing sequence annotations on 3D structure.Structural alignment of protein descriptors - a combinatorial model.Impact of genetic variation on three dimensional structure and function of proteins.Native structure-based modeling and simulation of biomolecular systems per mouse click.BioJS: an open source JavaScript framework for biological data visualization.StreamingTrim 1.0: a Java software for dynamic trimming of 16S rRNA sequence data from metagenetic studies.Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank.The RCSB protein data bank: integrative view of protein, gene and 3D structural information.BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures.Bioclojure: a functional library for the manipulation of biological sequences.Characteristics of protein residue-residue contacts and their application in contact prediction Elevated APOBEC3B correlates with poor outcomes for estrogen-receptor-positive breast cancers Secondary structure, a missing component of sequence-based minimotif definitions.Single Gene Prognostic Biomarkers in Ovarian Cancer: A Meta-Analysis.The RosettaCon 2012 Special Collection: Code Writ on Water, Documentation Writ in Stone.TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline.SNP-Seek database of SNPs derived from 3000 rice genomes.Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.

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BioJava: an open-source framework for bioinformatics in 2012

http://www.wikidata.org/entity/Q24630147

description

2012 nî lūn-bûn

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2012 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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BioJava: an open-source framework for bioinformatics in 2012

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Chuan Hock Koh

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Gediminas Rimsa

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H Brandstätter-Müller

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Mark Chapman

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Michael L Heuer

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Peter V Troshin

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Scooter Willis

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Sylvain Foisy

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P2860

Pre-calculated protein structure alignments at the RCSB PDB website

The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications

The Protein Data Bank

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

E-MSD: an integrated data resource for bioinformatics

HMMER web server: interactive sequence similarity searching

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

The RCSB Protein Data Bank: redesigned web site and web services

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering

BioRuby: bioinformatics software for the Ruby programming language

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132138

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10.1093/BIOINFORMATICS/BTS494

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Spencer E. Bliven

Richard Holland

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22877863

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open-source software

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3467744

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