PhylomeDB: a database for genome-wide collections of gene phylogenies - Wikidata - thesis-toulmin - TriplyDB

PhylomeDB: a database for genome-wide collections of gene phylogenies

PhylomeDB: a database for genome-wide collections of gene phylogenies

http://www.wikidata.org/entity/Q24650404

about

Getting started in gene orthology and functional analysis Genome sequence of the pea aphid Acyrthosiphon pisum ETE: a python Environment for Tree Exploration PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidase Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 OMA 2011: orthology inference among 1000 complete genomes PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations The use of evolutionary patterns in protein annotation Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs The family structure of the Mucorales: a synoptic revision based on comprehensive multigene-genealogies 2x genomes--depth does matter trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life.The tree versus the forest: the fungal tree of life and the topological diversity within the yeast phylome Phylogenomics of the oxidative phosphorylation in fungi reveals extensive gene duplication followed by functional divergence.GIGA: a simple, efficient algorithm for gene tree inference in the genomic age.BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments.Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.Genome-wide comparative gene family classification CycADS: an annotation database system to ease the development and update of BioCyc databases Bioinformatic Identification of Novel Methyltransferases An integrative approach to ortholog prediction for disease-focused and other functional studies.Computational biophysical, biochemical, and evolutionary signature of human R-spondin family proteins, the member of canonical Wnt/β-catenin signaling pathway QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence.Molecular characterization of the evolution of phagosomes.PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.Inferring hierarchical orthologous groups from orthologous gene pairs.Computational discovery of transcriptional regulatory modules in fungal ribosome biogenesis genes reveals novel sequence and function patterns Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.Ortholog identification in the presence of domain architecture rearrangement.Global analysis of serine-threonine protein kinase genes in Neurospora crassa Genome-Wide Collation of the Plasmodium falciparum WDR Protein Superfamily Reveals Malarial Parasite-Specific Features Revealing mammalian evolutionary relationships by comparative analysis of gene clusters

P2860

Q21090163-E3CB5B0E-0520-4333-BC9E-1B61404493E1 Q21090181-FD3F5D46-9BF3-499D-B94E-B742C6DA1E5A Q21093654-AAD89A2C-4412-49F7-A8B6-05F307D32587 Q21128673-ACB1063F-995B-4F90-9FCA-F620C631DE8A Q21184006-196B0851-675D-47D8-9828-E6006A5F0ED2 Q22122304-2072F9E2-CC17-43AE-840D-AEEC01ACD8EA Q24608310-E5E7E8BB-64F9-439C-9175-B4286DCC4CB8 Q24610080-C43FC53D-BFD4-4E68-8E53-D00A95A9371D Q24612855-2A8F11CE-F0C8-4FA3-9951-6094707AA80A Q24619608-C4157861-0A7F-4288-A73D-3AEDEF3F718F Q24635078-91FF893D-4130-4C48-B2B6-17A0B8A4F4AC Q24644077-38A6C1DD-BD22-4966-B110-08D73DDFB1FF Q27027251-32F13826-B570-4496-8D29-5D846502B466 Q28650295-1BDB747F-4CE2-4BBE-9174-3994CB25D4B4 Q28686959-29172EEB-81C1-49C4-8E96-58BCBA268987 Q28752080-A925A756-830E-4A6A-A040-AE6D8B6C674F Q29547690-A84D6B15-F246-4C5D-9D62-60D9BADC9D72 Q31037819-AF222CE6-50C4-4C38-BB28-429A6D546430 Q31049709-005834DE-2D64-44C7-9FC9-7B287EA2BAFE Q33405245-46275652-5E8E-4DEC-87D9-94A8E4240820 Q33520083-56B2DB1A-AA64-4740-8D47-8383842DBDF1 Q33599425-3AA4062C-AE4B-4371-96F7-6806D5CF2842 Q33631749-B6388B75-730C-4384-A1CD-445681425104 Q33673805-E632D6B7-0E53-4D21-B33A-63C0C0DD2BF3 Q33728562-75458B09-38B2-49A7-A940-DEAC056C4A15 Q33865553-46DCBF3D-D77C-43AC-BBA3-984161381946 Q33938689-A5665B99-EC0F-4F3A-9B94-009E320414A6 Q34006468-B09C06FB-88D2-4945-84CC-5AD25C28A4D8 Q34233989-04086DFD-BD66-4378-B7E1-E909F5A05353 Q34315091-F6AC0347-12B1-4811-B7DC-7645B971DACA Q34344310-996E844C-BDB2-4560-979F-56EB8C2C50FA Q34387795-A3BBB9FF-E1F0-4E80-B2A8-499C3656A5A0 Q34558713-45CFA4E2-07A4-40F7-8F0F-CD16FCF1D61C Q34652402-D05DC9D6-D00C-404F-88EA-02D67F147BDD Q35006530-AB114A47-C0BF-4990-B5BC-5AE3A9BDFD01 Q35213595-4113976B-1A89-48A2-916A-CDA12C853A2F Q35226472-1D1BA84B-B04E-47D5-B3E8-D73B368B76AF Q35530402-B7733020-887B-42F6-BACB-C9EB2C5316BF Q35652830-3428DB40-003E-487B-930A-C5241A80E3A1 Q35930303-3BAC8A5E-0D95-48C1-BDFC-FC98F14D614A

P2860

PhylomeDB: a database for genome-wide collections of gene phylogenies

http://www.wikidata.org/entity/Q24650404

description

2008 nî lūn-bûn

@nan

2008 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2008 թվականի հունվարին հրատարակված գիտական հոդված

@hy

2008年の論文

@ja

2008年論文

@yue

2008年論文

@zh-hant

2008年論文

@zh-hk

2008年論文

@zh-mo

2008年論文

@zh-tw

2008年论文

@wuu

name

PhylomeDB: a database for genome-wide collections of gene phylogenies

@ast

PhylomeDB: a database for genome-wide collections of gene phylogenies

@en

PhylomeDB: a database for genome-wide collections of gene phylogenies

@nl

type

label

PhylomeDB: a database for genome-wide collections of gene phylogenies

@ast

PhylomeDB: a database for genome-wide collections of gene phylogenies

@en

PhylomeDB: a database for genome-wide collections of gene phylogenies

@nl

prefLabel

PhylomeDB: a database for genome-wide collections of gene phylogenies

@ast

PhylomeDB: a database for genome-wide collections of gene phylogenies

@en

PhylomeDB: a database for genome-wide collections of gene phylogenies

@nl

P1433

Q24650404-38A223D0-568A-4BC7-80A2-ADCF0E259A16

P1476

Q24650404-A7BA1BC1-A2FC-4214-BAE0-427A8A562DC9

P2860

Q24650404-173BC342-6795-4C15-B20A-2ECF3EE2A7E0

Q24650404-306E5BC0-B80D-49A9-A04C-3EDC62B26C1B

Q24650404-42D3EE06-095D-40F1-88ED-A75048D30CE5

Q24650404-45DCAA0F-9579-474A-A14D-967A31223954

Q24650404-4B5C7178-70BB-4B2C-AC86-FAFD03FB1582

Q24650404-57E582DD-57ED-473B-A9A8-D4F6DE48A797

Q24650404-64CE2DAC-6F9F-42E0-A328-01FBFBFAF102

Q24650404-67DDB850-81CC-4009-AA0F-36427065F65E

Q24650404-6FCCFAE5-3FDA-4DA8-9322-D5271141CABE

Q24650404-70B8C45D-06D5-44BB-BE21-B7090BE9B600

P304

Q24650404-7164DEFF-43E4-443D-8412-B31B5C6F9071

P31

Q24650404-F130B92A-D7DD-4B4D-A7B0-3837130181A7

P3181

Q24650404-105F1558-AE2D-4CF7-AD44-9DE31A2D13F2

P356

Q24650404-4C684E17-618E-4E61-B3E7-DC11569A90A2

P407

Q24650404-FA4BE406-367C-4E92-82F0-2DF8953D9D98

P433

Q24650404-D1D8526B-C2F1-46C9-A44C-A22764CD582B

P478

Q24650404-B937E5EF-E4E1-4230-A3E4-652E941C24CD

P50

Q24650404-6DFA24B2-DB02-4409-8161-079826FD1FBE

Q24650404-AE4F1C49-DA6C-494D-BF50-74D017EAA4EE

Q24650404-D0992109-A762-4BAF-A5B0-C31FCB91BC90

Q24650404-F798EBB6-793E-467B-92CF-BB47723A7E68

P577

Q24650404-7CF3182C-4B46-44DB-B7F0-67E2F7136027

P5875

Q24650404-8E81E125-48D2-4807-B06F-E3E6CB288CF3

P698

Q24650404-5510C553-2961-41E5-B75C-D3C493929889

P921

Q24650404-4469FB1F-0256-4F7A-B0E6-B6ADD814B66B

Q24650404-6D397C21-5CDD-4B95-B817-0C6B2433CF5E

P932

Q24650404-05040802-67D2-4E4C-A9B0-D567DE6477AB

P3181

P356

P1433

Nucleic Acids Research

P1476

PhylomeDB: a database for genome-wide collections of gene phylogenies

@en

P2860

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

TreeFam: a curated database of phylogenetic trees of animal gene families

MrBayes 3: Bayesian phylogenetic inference under mixed models

Identification of common molecular subsequences

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

The Jalview Java alignment editor

Reconstruction of the proto-mitochondrial metabolism

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

HOVERGEN: a database of homologous vertebrate genes.

P304

D491-6

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P3181

1070037

http://www.w3.org/2001/XMLSchema#string

P356

10.1093/NAR/GKM899

http://www.w3.org/2001/XMLSchema#string

P407

P433

Database issue

http://www.w3.org/2001/XMLSchema#string

P478

36

http://www.w3.org/2001/XMLSchema#string

P50

Jaime Huerta-Cepas

Joaquín Dopazo

P577

2008-01-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

5884178

http://www.w3.org/2001/XMLSchema#string

P698

17962297

http://www.w3.org/2001/XMLSchema#string

P921

P932

2238872

http://www.w3.org/2001/XMLSchema#string