Tools for the automatic identification and classification of RNA base pairs - Wikidata - thesis-toulmin - TriplyDB

Tools for the automatic identification and classification of RNA base pairs

Tools for the automatic identification and classification of RNA base pairs

http://www.wikidata.org/entity/Q24672574

about

PyCogent: a toolkit for making sense from sequence.CyloFold: secondary structure prediction including pseudoknots Automated 3D structure composition for large RNAs Turning limited experimental information into 3D models of RNA Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments Facile FMR1 mRNA structure regulation by interruptions in CGG repeats Single nucleotide RNA choreography Searching for IRES A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization A posterioridesign of crystal contacts to improve the X-ray diffraction properties of a small RNA enzyme The Structural Basis for Recognition of the PreQ0 Metabolite by an Unusually Small Riboswitch Aptamer Domain The crystal structure of unmodified tRNAPhe from Escherichia coli NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions The complex of tmRNA-SmpB and EF-G on translocating ribosomes Crystal structure of a 4-thiouridine synthetase-RNA complex reveals specificity of tRNA U8 modification Tertiary contacts distant from the active site prime a ribozyme for catalysis.Structural basis for the control of translation initiation during stress Network Properties of the Ensemble of RNA Structures Molecular paleontology: a biochemical model of the ancestral ribosome CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction The building blocks and motifs of RNA architecture Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics.UQlust: combining profile hashing with linear-time ranking for efficient clustering and analysis of big macromolecular data A mechanism for S-adenosyl methionine assisted formation of a riboswitch conformation: a small molecule with a strong arm Characterizing RNA ensembles from NMR data with kinematic models.Predicting helical topologies in RNA junctions as tree graphs.RNA STRAND: the RNA secondary structure and statistical analysis database.RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels Using sequence signatures and kink-turn motifs in knowledge-based statistical potentials for RNA structure prediction.FR3D: finding local and composite recurrent structural motifs in RNA 3D structures Atomic accuracy in predicting and designing noncanonical RNA structure.On the role of Hoogsteen:Hoogsteen interactions in RNA: ab initio investigations of structures and energies Computing the partition function for kinetically trapped RNA secondary structures.RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment.The Kernel Energy Method: application to a tRNA.Conformational features of topologically classified RNA secondary structures The application of cluster analysis in the intercomparison of loop structures in RNA.Computational approaches for RNA energy parameter estimation

P2860

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P2860

Tools for the automatic identification and classification of RNA base pairs

http://www.wikidata.org/entity/Q24672574

description

2003 nî lūn-bûn

@nan

2003 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

2003 թվականի հուլիսին հրատարակված գիտական հոդված

@hy

2003年の論文

@ja

2003年論文

@yue

2003年論文

@zh-hant

2003年論文

@zh-hk

2003年論文

@zh-mo

2003年論文

@zh-tw

2003年论文

@wuu

name

Tools for the automatic identification and classification of RNA base pairs

@ast

Tools for the automatic identification and classification of RNA base pairs

@en

Tools for the automatic identification and classification of RNA base pairs

@nl

type

label

Tools for the automatic identification and classification of RNA base pairs

@ast

Tools for the automatic identification and classification of RNA base pairs

@en

Tools for the automatic identification and classification of RNA base pairs

@nl

prefLabel

Tools for the automatic identification and classification of RNA base pairs

@ast

Tools for the automatic identification and classification of RNA base pairs

@en

Tools for the automatic identification and classification of RNA base pairs

@nl

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Nucleic Acids Research

P1476

Tools for the automatic identification and classification of RNA base pairs

@en

P2093

Fabrice Jossinet

http://www.w3.org/2001/XMLSchema#string

Huanwang Yang

http://www.w3.org/2001/XMLSchema#string

Li Chen

http://www.w3.org/2001/XMLSchema#string

Neocles Leontis

http://www.w3.org/2001/XMLSchema#string

P2860

Crystal structure of the spliceosomal U2B"-U2A' protein complex bound to a fragment of U2 small nuclear RNA

The Protein Data Bank

Geometric nomenclature and classification of RNA base pairs

The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site

A detailed view of a ribosomal active site: the structure of the L11-RNA complex

The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA

Insights into editing from an ile-tRNA synthetase structure with tRNAile and mupirocin

The two faces of the Escherichia coli 23 S rRNA sarcin/ricin domain: the structure at 1.11 A resolution

Synthesis of aspartyl-tRNA(Asp) in Escherichia coli--a snapshot of the second step.

The structural basis for molecular recognition by the vitamin B 12 RNA aptamer

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3450-60

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scholarly article

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1204321

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10.1093/NAR/GKG529

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13

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31

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P50

Helen M. Berman

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2003-07-01T00:00:00Z

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10693443

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12824344

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168936

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