DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. - Wikidata - thesis-toulmin - TriplyDB

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

http://www.wikidata.org/entity/Q25256696

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Characterization and identification of microRNA core promoters in four model species Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method A code for transcription initiation in mammalian genomes Transcription of the human cell cycle regulated BUB1B gene requires hStaf/ZNF143 Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes c-myc Repression of TSC2 contributes to control of translation initiation and Myc-induced transformation Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites A data integration approach for cell cycle analysis oriented to model simulation in systems biology CpGcluster: a distance-based algorithm for CpG-island detection.Beyond microarrays: find key transcription factors controlling signal transduction pathways Identification of plant promoter constituents by analysis of local distribution of short sequences MetaProm: a neural network based meta-predictor for alternative human promoter prediction.Expressed sequence tags from cynomolgus monkey (Macaca fascicularis) liver: a systematic identification of drug-metabolizing enzymes.Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.RBF-TSS: identification of transcription start site in human using radial basis functions network and oligonucleotide positional frequencies.Prediction of CpG-island function: CpG clustering vs. sliding-window methods.Inflammation-associated repression of vasodilator-stimulated phosphoprotein (VASP) reduces alveolar-capillary barrier function during acute lung injury.IFN-γ attenuates hypoxia-inducible factor (HIF) activity in intestinal epithelial cells through transcriptional repression of HIF-1β Identification of vasodilator-stimulated phosphoprotein (VASP) as an HIF-regulated tissue permeability factor during hypoxia Growth controls connect: interactions between c-myc and the tuberous sclerosis complex-mTOR pathway.Diversity of translation start sites may define increased complexity of the human short ORFeome.A comparison study on feature selection of DNA structural properties for promoter prediction.Profiling ascidian promoters as the primordial type of vertebrate promoter GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters Cross-species comparison of genomewide gene expression profiles reveals induction of hypoxia-inducible factor-responsive genes in iron-deprived intestinal epithelial cells.A genome scale location analysis of human Staf/ZNF143-binding sites suggests a widespread role for human Staf/ZNF143 in mammalian promoters.Transcription factor binding and modified histones in human bidirectional promoters.PromAn: an integrated knowledge-based web server dedicated to promoter analysis.Comparative genomics of Drosophila and human core promoters Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.Vasodilator phosphostimulated protein (VASP) protects endothelial barrier function during hypoxia.Identification of N-acetyltransferase 2 (NAT2) transcription start sites and quantitation of NAT2-specific mRNA in human tissues.Prediction for human transcription start site using diversity measure with quadratic discriminant.Profiling the thermodynamic softness of adenoviral promoters.Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics Identifying genes progressively silenced in preneoplastic and neoplastic liver tissues.Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum.HIF-dependent regulation of AKAP12 (gravin) in the control of human vascular endothelial function.

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P2860

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

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2006年の論文

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Nucleic Acids Research

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DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

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Hiroyuki Wakaguri

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Katsuki Tsuritani

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Kenta Nakai

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Riu Yamashita

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Sumio Sugano

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Yutaka Suzuki

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P2860

Complete sequencing and characterization of 21,243 full-length human cDNAs

Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D

Genomic sequences of human protamines whose genes, PRM1 and PRM2, are clustered

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library

High-efficiency full-length cDNA cloning by biotinylated CAP trapper

The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

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10.1093/NAR/GKJ129

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Database issue

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34

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16381981

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1347491

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