Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments
about
Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle.Crystallographic studies of chemically modified nucleic acids: a backward glanceStabilizing contributions of sulfur-modified nucleotides: crystal structure of a DNA duplex with 2'-O-[2-(methoxy)ethyl]-2-thiothymidinesA coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution.Assessing the Current State of Amber Force Field Modifications for DNAMetal ions and flexibility in a viral RNA pseudoknot at atomic resolutionEncapsulating streptomycin within a small 40-mer RNAA crystallographic study of the binding of 13 metal ions to two related RNA duplexesA thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+/Na+ ionsThe 1.3 A resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contractionCation-selective Pathway of OmpF Porin Revealed by Anomalous X-ray DiffractionHigh regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 AStructural fluctuation observed in Z-DNA d(CGCGCG) 2 in the absence of divalent metal cations and polyaminesPhosphates in the Z-DNA dodecamer are flexible, but their P-SAD signal is sufficient for structure solutionUltrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ionsMg2+ ions: do they bind to nucleobase nitrogens?DNA-dependent divalent cation binding in the nucleosome core particle.Diffraction techniques in structural biologyKnowledge-based elastic potentials for docking drugs or proteins with nucleic acidsMetal ions: supporting actors in the playbook of small ribozymes.Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.Flanking A·T basepairs destabilize the B(∗) conformation of DNA A-tracts.Roles of Residues Arg-61 and Gln-38 of Human DNA Polymerase η in Bypass of Deoxyguanosine and 7,8-Dihydro-8-oxo-2'-deoxyguanosine.Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes.Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA and Z-DNA.Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding proteinThe long and winding road to the structure of homo-DNA.2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase HIon motions in molecular dynamics simulations on DNA.Influence of netropsin's charges on the minor groove width of d(CGCGAATTCGCG)2.Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?Balancing the interactions of ions, water, and DNA in the Drude polarizable force field.Competition among Li(+), Na(+), K(+), and Rb(+) monovalent ions for DNA in molecular dynamics simulations using the additive CHARMM36 and Drude polarizable force fields.Polarizable atomic multipole X-ray refinement: application to peptide crystalsA preliminary neutron crystallographic study of an A-DNA crystal.Differential Deformability of the DNA Minor Groove and Altered BI/BII Backbone Conformational Equilibrium by the Monovalent Ions Li(+), Na(+), K(+), and Rb(+) via Water-Mediated Hydrogen Bonding.Effect of initial ion positions on the interactions of monovalent and divalent ions with a DNA duplex as revealed with atomistic molecular dynamics simulations.The effects of metal ion contaminants on the double stranded DNA helix and diseases.Polarizable Force Field for DNA Based on the Classical Drude Oscillator: II. Microsecond Molecular Dynamics Simulations of Duplex DNA.Four highly pseudosymmetric and/or twinned structures of d(CGCGCG)2 extend the repertoire of crystal structures of Z-DNA.
P2860
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P2860
Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments
description
2001 nî lūn-bûn
@nan
2001 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2001 թվականի մարտին հրատարակված գիտական հոդված
@hy
2001年の論文
@ja
2001年論文
@yue
2001年論文
@zh-hant
2001年論文
@zh-hk
2001年論文
@zh-mo
2001年論文
@zh-tw
2001年论文
@wuu
name
Detection of alkali metal ions ...... X-ray diffraction experiments
@ast
Detection of alkali metal ions ...... X-ray diffraction experiments
@en
Detection of alkali metal ions ...... X-ray diffraction experiments
@nl
type
label
Detection of alkali metal ions ...... X-ray diffraction experiments
@ast
Detection of alkali metal ions ...... X-ray diffraction experiments
@en
Detection of alkali metal ions ...... X-ray diffraction experiments
@nl
prefLabel
Detection of alkali metal ions ...... X-ray diffraction experiments
@ast
Detection of alkali metal ions ...... X-ray diffraction experiments
@en
Detection of alkali metal ions ...... X-ray diffraction experiments
@nl
P2093
P2860
P3181
P356
P1476
Detection of alkali metal ions ...... X-ray diffraction experiments
@en
P2093
M Manoharan
T P Prakash
P2860
P304
P3181
P356
10.1093/NAR/29.5.1208
P407
P577
2001-03-01T00:00:00Z