about
The genome of the sea urchin Strongylocentrotus purpuratusSequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolutionBest practices for scientific computingPaircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparisonChanging computational research. The challenges aheadHow open science helps researchers succeed.A genomic regulatory network for developmentWalking the Talk: Adopting and Adapting Sustainable Scientific Software Development processes in a Small Biology LabChanneling Community Contributions to Scientific Software: A Sprint Experience.Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax wormsCephalopod genomics: A plan of strategies and organizationHigh regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolutionEvolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coliRibosomal Database Project: data and tools for high throughput rRNA analysis.These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure.Genomic resources for the study of sea urchin development.Sustainable computational science: the ReScience initiativeThe genome and developmental transcriptome of the strongylid nematode Haemonchus contortusStanding genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host.Evolutionary loss of melanogenesis in the tunicate Molgula occulta.Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.Draft genome sequences of two Campylobacter jejuni clinical isolates, NW and D2600.Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships.Advancing the microbiome research communityThe sea lamprey has a primordial accessory olfactory system.Tackling soil diversity with the assembly of large, complex metagenomes.Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians.The khmer software package: enabling efficient nucleotide sequence analysis.Hsp90 and hepatobiliary transformation during sea lamprey metamorphosis.Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.Xander: employing a novel method for efficient gene-targeted metagenomic assembly.Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages.Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.Differentially-Expressed Pseudogenes in HIV-1 InfectionTissue resolved, gene structure refined equine transcriptomeDiverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics.A thermogenic secondary sexual character in male sea lampreyIntegrated analyses of genome-wide DNA occupancy and expression profiling identify key genes and pathways involved in cellular transformation by a Marek's disease virus oncoprotein, Meq.Computational approaches to finding and analyzing cis-regulatory elements.
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Amerikaans onderzoeker
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C. Titus Brown
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