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Toward a protein profile of Escherichia coli: comparison to its transcription profile

Toward a protein profile of Escherichia coli: comparison to its transcription profile

http://www.wikidata.org/entity/Q30311067

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The Escherichia coli proteome: past, present, and future prospects Extending knowledge of Escherichia coli metabolism by modeling and experiment The role of mRNA structure in bacterial translational regulation Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass NrdR Transcription Regulation: Global Proteome Analysis and Its Role in Escherichia coli Viability and Virulence Association between translation efficiency and horizontal gene transfer within microbial communities Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis.Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes Genes associated with genotype-specific DNA methylation in squamous cell carcinoma as candidate drug targets.Periplasmic proteins of the extremophile Acidithiobacillus ferrooxidans: a high throughput proteomics analysis.GMD@CSB.DB: the Golm Metabolome Database.Large-scale comparative genomic ranking of taxonomically restricted genes (TRGs) in bacterial and archaeal genomes.Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data.Integration of omics data: how well does it work for bacteria?Classification and identification of bacteria using mass spectrometry-based proteomics.Protein abundance profiling of the Escherichia coli cytosol Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference.Dynamic changes in protein functional linkage networks revealed by integration with gene expression data.Comparative transcriptomic analysis of Porphyromonas gingivalis biofilm and planktonic cells.Integrating shotgun proteomics and mRNA expression data to improve protein identification Network analysis of the transcriptional pattern of young and old cells of Escherichia coli during lag phase.emPAI Calc--for the estimation of protein abundance from large-scale identification data by liquid chromatography-tandem mass spectrometry.Metaproteomics-guided selection of targeted enzymes for bioprospecting of mixed microbial communities Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean Characterization and sequence identification of angiotensin II by a novel method involving ultra-fast liquid chromatography assay coupled with matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight five tandem mass spectromet Global signatures of protein and mRNA expression levels.Expression screening of fusion partners from an E. coli genome for soluble expression of recombinant proteins in a cell-free protein synthesis system Genome image programs: visualization and interpretation of Escherichia coli microarray experiments Escherichia coli competence gene homologs are essential for competitive fitness and the use of DNA as a nutrient.Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations Daptomycin resistance mechanisms in clinically derived Staphylococcus aureus strains assessed by a combined transcriptomics and proteomics approach Systems biology approach predicts antibody signature associated with Brucella melitensis infection in humans.Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site overlapping the Shine-Dalgarno sequence Mass spectrometric approaches for characterizing bacterial proteomes.Quantification of global transcription patterns in prokaryotes using spotted microarrays Practical applications of bacterial functional genomics.Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage.

P2860

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P2860

Toward a protein profile of Escherichia coli: comparison to its transcription profile

http://www.wikidata.org/entity/Q30311067

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2003 nî lūn-bûn

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2003 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2003 թվականի հուլիսին հրատարակված գիտական հոդված

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2003年の論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年論文

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2003年论文

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name

Toward a protein profile of Escherichia coli: comparison to its transcription profile

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Toward a protein profile of Escherichia coli: comparison to its transcription profile

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Toward a protein profile of Escherichia coli: comparison to its transcription profile

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Toward a protein profile of Escherichia coli: comparison to its transcription profile

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Toward a protein profile of Escherichia coli: comparison to its transcription profile

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Toward a protein profile of Escherichia coli: comparison to its transcription profile

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PNAS.1533294100

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Proceedings of the National Academy of Sciences of the United States of America

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Toward a protein profile of Escherichia coli: comparison to its transcription profile

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Charles E Lyons

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Donald F Hunt

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Eric Soupene

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Feng Yang

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Jon McAuliffe

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Karen Root

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Mark Platt

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Oleg Paliy

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Rebecca W Corbin

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P2860

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

Identification of novel small RNAs using comparative genomics and microarrays

The complete genome sequence of Escherichia coli K-12

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

Proteomic analysis of early melanosomes: identification of novel melanosomal proteins

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

A proteomic view of the Plasmodium falciparum life cycle

Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry.

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9232-9237

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scholarly article

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10.1073/PNAS.1533294100

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16

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100

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Jeffrey Shabanowitz

Michael I. Jordan

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2003-07-23T00:00:00Z

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10646190

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12878731

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Escherichia coli

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170901

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