COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals. - Wikidata - thesis-toulmin - TriplyDB

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.

http://www.wikidata.org/entity/Q30579745

about

Establishing an analytic pipeline for genome-wide DNA methylation Advanced Applications of RNA Sequencing and Challenges Unique ability of pandemic influenza to downregulate the genes involved in neuronal disorders.ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.GENIUS: web server to predict local gene networks and key genes for biological functions.COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems.Database of Gene Co-Regulation (dGCR): A Web Tool for Analysing Patterns of Gene Co-regulation across Publicly Available Expression Data Identification of key genes associated with gastric cancer based on DNA microarray data.The CO-Regulation Database (CORD): a tool to identify coordinately expressed genes CorrelaGenes: a new tool for the interpretation of the human transcriptome IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics.Transcriptional regulation and spatial interactions of head-to-head genes Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana.Pathway reporter genes define molecular phenotypes of human cells PLD3 is accumulated on neuritic plaques in Alzheimer's disease brains.Gene age predicts the strength of purifying selection acting on gene expression variation in humans Efficient and simple production of insulin-producing cells from embryonal carcinoma stem cells using mouse neonate pancreas extract, as a natural inducer.Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis A set of structural features defines the cis-regulatory modules of antenna-expressed genes in Drosophila melanogaster.GeneFriends: a human RNA-seq-based gene and transcript co-expression database ImmuCo: a database of gene co-expression in immune cells.CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events.Competition-cooperation relationship networks characterize the competition and cooperation between proteins New genes drive the evolution of gene interaction networks in the human and mouse genomes G-Links: a gene-centric link acquisition service.The Utility of Gene Expression Profiling from Tissue Samples to Support Drug Safety Assessments.WeGET: predicting new genes for molecular systems by weighted co-expression.ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression Survey of variation in human transcription factors reveals prevalent DNA binding changes.Gene expression changes in damaged osteoarthritic cartilage identify a signature of non-chondrogenic and mechanical responses Systems-based understanding of pharmacological responses with combinations of multidisciplinary methodologies.Exploiting single-cell expression to characterize co-expression replicability FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks.Detecting reliable non interacting proteins (NIPs) significantly enhancing the computational prediction of protein-protein interactions using machine learning methods.edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test.Elucidation of drivers of high-level production of lactates throughout a cancer development.Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.Haploinsufficiency predictions without study bias.Hsp90-downregulation influences the heat-shock response, innate immune response and onset of oocyte development in nematodes.Phen-Gen: combining phenotype and genotype to analyze rare disorders.

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P2860

COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals.

http://www.wikidata.org/entity/Q30579745

description

2012 nî lūn-bûn

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2012 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2012年の論文

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Nucleic Acids Research

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COXPRESdb: a database of compa ...... of eleven species for mammals

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P2093

Ikuko N Motoike

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Kengo Kinoshita

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Satoshi Ito

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Takeshi Obayashi

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P2860

Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes

Database resources of the National Center for Biotechnology Information

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

DBTSS: DataBase of Transcriptional Start Sites progress report in 2012

The IntAct molecular interaction database in 2012

Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

KEGG for integration and interpretation of large-scale molecular data sets

Human Protein Reference Database--2009 update

Cytoscape 2.8: new features for data integration and network visualization

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10.1093/NAR/GKS1014

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Database issue

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41

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Yasunobu Okamura

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2012-11-29T00:00:00Z

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233829835

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