IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data - Wikidata - thesis-toulmin - TriplyDB

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

http://www.wikidata.org/entity/Q34130053

about

Developmental exposure to estrogen alters differentiation and epigenetic programming in a human fetal prostate xenograft model DNA methylation changes in genes frequently mutated in sporadic colorectal cancer and in the DNA repair and Wnt/β-catenin signaling pathway genes Establishing an analytic pipeline for genome-wide DNA methylation Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis Epigenetic epidemiology: promises for public health research DNA methylation data analysis and its application to cancer research Review of processing and analysis methods for DNA methylation array data Integrating Epigenomics into the Understanding of Biomedical Insight Lead exposure disrupts global DNA methylation in human embryonic stem cells and alters their neuronal differentiation Mosaic epigenetic dysregulation of ectodermal cells in autism spectrum disorder Epigenomics and allergic disease DNA methyltransferase inhibitor zebularine inhibits human hepatic carcinoma cells proliferation and induces apoptosis Genome-wide DNA methylation analysis of patients with imprinting disorders identifies differentially methylated regions associated with novel candidate imprinted genes Identification of differentially methylated loci using wavelet-based functional mixed models.A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.A data-driven approach to preprocessing Illumina 450K methylation array data.Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS).Quantitative identification of differentially methylated loci based on relative entropy for matched case-control data.Next-generation technologies and data analytical approaches for epigenomics.Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data Comprehensive analysis of DNA methylation data with RnBeads.A meta-analysis on age-associated changes in blood DNA methylation: results from an original analysis pipeline for Infinium 450k data.A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies.A statistical method for single sample analysis of HumanMethylation450 array data: genome-wide methylation analysis of patients with imprinting disorders.PINCAGE: probabilistic integration of cancer genomics data for perturbed gene identification and sample classification.seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.Methods for identifying differentially methylated regions for sequence- and array-based data.Statistical challenges in analyzing methylation and long-range chromosomal interaction data Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data.Whole-genome analysis of papillary kidney cancer finds significant noncoding alterations Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays A novel method for identification and quantification of consistently differentially methylated regions The interplay of DNA methylation over time with Th2 pathway genetic variants on asthma risk and temporal asthma transition.DMRforPairs: identifying differentially methylated regions between unique samples using array based methylation profiles Bioinformatic analysis of the effects and mechanisms of decitabine and cytarabine on acute myeloid leukemia DNA methylation modifications associated with chronic fatigue syndrome.Whole genome DNA methylation signature of HER2-positive breast cancer Oral contraceptives modify the effect of GATA3 polymorphisms on the risk of asthma at the age of 18 years via DNA methylation Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.

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IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

http://www.wikidata.org/entity/Q34130053

description

2012 nî lūn-bûn

@nan

2012 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի հունվարին հրատարակված գիտական հոդված

@hy

2012年の論文

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2012年論文

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2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

IMA: an R package for high-thr ...... 450K Infinium methylation data

@ast

IMA: an R package for high-thr ...... 450K Infinium methylation data

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IMA: an R package for high-thr ...... 450K Infinium methylation data

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type

label

IMA: an R package for high-thr ...... 450K Infinium methylation data

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IMA: an R package for high-thr ...... 450K Infinium methylation data

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IMA: an R package for high-thr ...... 450K Infinium methylation data

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prefLabel

IMA: an R package for high-thr ...... 450K Infinium methylation data

@ast

IMA: an R package for high-thr ...... 450K Infinium methylation data

@en

IMA: an R package for high-thr ...... 450K Infinium methylation data

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IMA: an R package for high-thr ...... 450K Infinium methylation data

@en

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Candace S Johnson

http://www.w3.org/2001/XMLSchema#string

Dan Wang

http://www.w3.org/2001/XMLSchema#string

Lara E Sucheston

http://www.w3.org/2001/XMLSchema#string

Li Yan

http://www.w3.org/2001/XMLSchema#string

Michael J Higgins

http://www.w3.org/2001/XMLSchema#string

Qiang Hu

http://www.w3.org/2001/XMLSchema#string

Song Liu

http://www.w3.org/2001/XMLSchema#string

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Bioconductor: open software development for computational biology and bioinformatics

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

The epigenomics of cancer

lumi: a pipeline for processing Illumina microarray

Conserved role of intragenic DNA methylation in regulating alternative promoters

Epigenetic modifications and human disease

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions.

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data.

An epigenetic signature in peripheral blood predicts active ovarian cancer

Accurate genome-scale percentage DNA methylation estimates from microarray data.

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729-730

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scholarly article

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10.1093/BIOINFORMATICS/BTS013

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5

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28

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Dominic J. Smiraglia

Christine Ambrosone

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2012-01-16T00:00:00Z

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221755211

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22253290

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3289916

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