Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes. - Wikidata - thesis-toulmin - TriplyDB

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

http://www.wikidata.org/entity/Q35493886

about

Widespread purifying selection on RNA structure in mammals The rise of regulatory RNA A high-resolution map of human evolutionary constraint using 29 mammals Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.Using genomics to characterize evolutionary potential for conservation of wild populations Synonymous constraint elements show a tendency to encode intrinsically disordered protein segments The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequences Coding exons function as tissue-specific enhancers of nearby genes Observation of dually decoded regions of the human genome using ribosome profiling data Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity.Effective population size does not predict codon usage bias in mammals Functional Implications of RNA Splicing for Human Long Intergenic Noncoding RNAs.Biological basis of miRNA action when their targets are located in human protein coding region Viral proteins originated de novo by overprinting can be identified by codon usage: application to the "gene nursery" of Deltaretroviruses FRESCo: finding regions of excess synonymous constraint in diverse viruses Systematic dissection of coding exons at single nucleotide resolution supports an additional role in cell-specific transcriptional regulation.Mitochondrial heteroplasmy in vertebrates using ChIP-sequencing data Translation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana.Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes.Combinatorial Gene Regulatory Functions Underlie Ultraconserved Elements in Drosophila.Identification of expressed and conserved human noncoding RNAs.Exonic transcription factor binding directs codon choice and affects protein evolution.Exonic enhancers: proceed with caution in exome and genome sequencing studies.Melting temperature highlights functionally important RNA structure and sequence elements in yeast mRNA coding regions Functional conservation of both CDS- and 3'-UTR-located microRNA binding sites between species.Estimating the prevalence of functional exonic splice regulatory information.Making enhancers from spare parts of the genome.Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses.Hundreds of conserved non-coding genomic regions are independently lost in mammals.Evolution. The hidden codes that shape protein evolution.Conservation of mRNA secondary structures may filter out mutations in Escherichia coli evolution.ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product?Disentangling Sources of Selection on Exonic Transcriptional Enhancers.SPARCS: a web server to analyze (un)structured regions in coding RNA sequences.SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences.Signatures of polygenic adaptation associated with climate across the range of a threatened fish species with high genetic connectivity.Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation.Comparative RNA Genomics.Circular RNA expression is abundant and correlated to aggressiveness in early-stage bladder cancer.

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P2860

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

http://www.wikidata.org/entity/Q35493886

description

2011 nî lūn-bûn

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2011 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

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2011 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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Locating protein-coding sequen ...... tions in 29 mammalian genomes.

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Locating protein-coding sequen ...... tions in 29 mammalian genomes.

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Locating protein-coding sequen ...... tions in 29 mammalian genomes.

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Genome Research

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Locating protein-coding sequen ...... tions in 29 mammalian genomes.

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Brian J Parker

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Michael F Lin

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Pouya Kheradpour

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Stefan Washietl

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P2860

Identification and classification of conserved RNA secondary structures in the human genome

The DNA sequence and biology of human chromosome 19

Ultraconserved Elements in the Human Genome

XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor

The 'effective number of codons' used in a gene

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing.

Estimating the "effective number of codons": the Wright way of determining codon homozygosity leads to superior estimates

A periodic pattern of mRNA secondary structure created by the genetic code

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

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