Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits. - Wikidata - thesis-toulmin - TriplyDB

Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits.

Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits.

http://www.wikidata.org/entity/Q35557677

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Atypical IκB proteins - nuclear modulators of NF-κB signaling Dry and wet approaches for genome-wide functional annotation of conventional and unconventional transcriptional activators Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes A multi-targeted approach to suppress tumor-promoting inflammation Quantitative Analysis of NF-κB Transactivation Specificity Using a Yeast-Based Functional Assay Cross-species analysis reveals evolving and conserved features of the nuclear factor κB (NF-κB) proteins Genome-wide predictors of NF-κB recruitment and transcriptional activity A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.Elevated levels of Bcl-3 inhibits Treg development and function resulting in spontaneous colitis.Absence of a simple code: how transcription factors read the genome High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding."Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response.Binding of NF-κB to nucleosomes: effect of translational positioning, nucleosome remodeling and linker histone H1.An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example.Lack of the ubiquitin-editing enzyme A20 results in loss of hematopoietic stem cell quiescence UV fluorescence of tryptophan residues effectively measures protein binding to nucleic acid fragments immobilized in gel elements of microarrays.Single-nucleotide mutation matrix: a new model for predicting the NF-κB DNA binding sites.Expression of caveolin in trabecular meshwork cells and its possible implication in pathogenesis of primary open angle glaucoma.Expression of the vault RNA protects cells from undergoing apoptosis Unraveling determinants of transcription factor binding outside the core binding site.Transcriptional Regulation of the Sodium-activated Potassium Channel SLICK (KCNT2) Promoter by Nuclear Factor-κB.BEESEM: estimation of binding energy models using HT-SELEX data.The REGγ-proteasome forms a regulatory circuit with IκBɛ and NFκB in experimental colitis Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors?Protection by dietary restriction in the YAC128 mouse model of Huntington's disease: Relation to genes regulating histone acetylation and HTT.Natural Agents Used in Chemoprevention of Aerodigestive and GI Cancers Association of the AIRE gene with susceptibility to rheumatoid arthritis in a European population: a case control study.Inhibition of protein kinase C signaling maintains rat embryonic stem cell pluripotency OGG1-DNA interactions facilitate NF-κB binding to DNA targets.Dimer-specific regulatory mechanisms within the NF-κB family of transcription factors.The complexity of NF-κB signaling in inflammation and cancer.Protein-DNA binding: complexities and multi-protein codes.The role of hypoxia in inflammatory disease (review)IL-4 Induces IL17Rb Gene Transcription in Monocytic Cells with Coordinate Autocrine IL-25 Signaling.Effect of natural genetic variation on enhancer selection and function.Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility c-Rel is a critical mediator of NF-κB-dependent TRAIL resistance of pancreatic cancer cells.Human transcription factors in yeast: the fruitful examples of P53 and NF-кB.Quantitative Analysis of Protein-DNA Interaction by qDPI-ELISA.Principles of dimer-specific gene regulation revealed by a comprehensive characterization of NF-κB family DNA binding.

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Imtiaz Nisar Lone

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Jiannis Ragoussis

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P2860

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

Quantitative prediction of NF-kappa B DNA-protein interactions.

A novel DNA recognition mode by the NF-kappa B p65 homodimer

Activation of IKKalpha target genes depends on recognition of specific kappaB binding sites by RelB:p52 dimers

Insights from genomic profiling of transcription factors

MATCH: A tool for searching transcription factor binding sites in DNA sequences

enoLOGOS: a versatile web tool for energy normalized sequence logos

Crystal structure of p50/p65 heterodimer of transcription factor NF-kappaB bound to DNA

Regulation of mating and filamentation genes by two distinct Ste12 complexes in Saccharomyces cerevisiae

A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

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