Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics
about
Protein flexibility in the light of structural alphabetsStructure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive reviewFrom Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved SectorsDetecting protein candidate fragments using a structural alphabet profile comparison approach.Vibrational resonance, allostery, and activation in rhodopsin-like G protein-coupled receptors.Predicting protein-protein interactions from primary protein sequences using a novel multi-scale local feature representation scheme and the random forestDifferences in allosteric communication pipelines in the inactive and active states of a GPCR.Allosteric communication across the native and mutated KIT receptor tyrosine kinase.Dynamic multiprotein assemblies shape the spatial structure of cell signalingDifferential effects of CSF-1R D802V and KIT D816V homologous mutations on receptor tertiary structure and allosteric communicationCommunication routes in ARID domains between distal residues in helix 5 and the DNA-binding loops.Using Local States To Drive the Sampling of Global Conformations in Proteins.The Phylogenetic Signature Underlying ATP Synthase c-Ring Compliance.AIM for Allostery: Using the Ising Model to Understand Information Processing and Transmission in Allosteric Biomolecular Systems.Implicit Solvation Parameters Derived from Explicit Water Forces in Large-Scale Molecular Dynamics Simulations.Computational approaches to detect allosteric pathways in transmembrane molecular machines.Thermostabilization of the β1-adrenergic receptor correlates with increased entropy of the inactive state.GSATools: analysis of allosteric communication and functional local motions using a structural alphabet.Specialized Dynamical Properties of Promiscuous Residues Revealed by Simulated Conformational Ensembles.The spatial structure of cell signaling systems.The Allostery Landscape: Quantifying Thermodynamic Couplings in Biomolecular Systems.Molecular dynamics simulations of hsp90 with an eye to inhibitor design.The multifaceted roles of metabolic enzymes in the Paracoccidioides species complex.Structural modeling of the AhR:ARNT complex in the bHLH-PASA-PASB region elucidates the key determinants of dimerization.Allosteric communication pipelines in G-protein-coupled receptors.Investigating Ebola virus pathogenicity using molecular dynamics.Anatomy of protein disorder, flexibility and disease-related mutationsCluster analysis of molecular simulation trajectories for systems where both conformation and orientation of the sampled states are importantSystems biology. How information theory handles cell signaling and uncertainty.Analysis on long-range residue-residue communication using molecular dynamics.Differential geometric analysis of alterations in MH α-helicesNew pipelines for novel allosteric GPCR modulatorsCurrent and emerging opportunities for molecular simulations in structure-based drug design.Evidence against the "Y-T coupling" mechanism of activation in the response regulator NtrC.Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil.Decomposing Dynamical Couplings in Mutated scFv Antibody Fragments into Stabilizing and Destabilizing Effects.Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by self-organising map analysis of their molecular dynamics.Mechanisms for allosteric activation of protease DegS by ligand binding and oligomerization as revealed from molecular dynamics simulations.
P2860
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P2860
Detection of allosteric signal transmission by information-theoretic analysis of protein dynamics
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
2011年论文
@zh
2011年论文
@zh-cn
name
Detection of allosteric signal ...... c analysis of protein dynamics
@ast
Detection of allosteric signal ...... c analysis of protein dynamics
@en
type
label
Detection of allosteric signal ...... c analysis of protein dynamics
@ast
Detection of allosteric signal ...... c analysis of protein dynamics
@en
prefLabel
Detection of allosteric signal ...... c analysis of protein dynamics
@ast
Detection of allosteric signal ...... c analysis of protein dynamics
@en
P2860
P50
P356
P1433
P1476
Detection of allosteric signal ...... c analysis of protein dynamics
@en
P2093
Arianna Fornili
P2860
P304
P356
10.1096/FJ.11-190868
P407
P577
2011-11-09T00:00:00Z