Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA. - Wikidata - thesis-toulmin - TriplyDB

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

http://www.wikidata.org/entity/Q36777856

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Directly interrogating single quantum dot labelled UvrA2 molecules on DNA tightropes using an optically trapped nanoprobe.Differential interaction kinetics of a bipolar structure-specific endonuclease with DNA flaps revealed by single-molecule imaging High-speed atomic force microscopy reveals strongly polarized movement of clostridial collagenase along collagen fibrils.Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex Online games: a novel approach to explore how partial information influences human random searches Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA.Analysis of a single-stranded DNA-scanning process in which activation-induced deoxycytidine deaminase (AID) deaminates C to U haphazardly and inefficiently to ensure mutational diversity AID and Apobec3G haphazard deamination and mutational diversity Extending single molecule fluorescence observation time by amplitude-modulated excitation.Collaborative dynamic DNA scanning by nucleotide excision repair proteins investigated by single- molecule imaging of quantum-dot-labeled proteins.Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data.From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions.Computational models for large-scale simulations of facilitated diffusion Diffusion of the restriction nuclease EcoRI along DNA.The dynamics of the monomeric restriction endonuclease BcnI during its interaction with DNA Tethered-hopping model for protein-DNA binding and unbinding based on Sox2-Oct1-Hoxb1 ternary complex simulations.Positive and negative impacts of nonspecific sites during target location by a sequence-specific DNA-binding protein: origin of the optimal search at physiological ionic strength.Hopping enables a DNA repair glycosylase to search both strands and bypass a bound protein.Type II restriction endonucleases--a historical perspective and more Combining optical trapping, fluorescence microscopy and micro-fluidics for single molecule studies of DNA-protein interactions.Ultrafast redistribution of E. coli SSB along long single-stranded DNA via intersegment transfer.Dynamic strategies for target-site search by DNA-binding proteins.Microscopic mechanism of DNA damage searching by hOGG1 Efficient preparation of internally modified single-molecule constructs using nicking enzymes.Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches.Selective microbial genomic DNA isolation using restriction endonucleases Direct observation of TALE protein dynamics reveals a two-state search mechanism DNA binding proteins explore multiple local configurations during docking via rapid rebinding.In vivo facilitated diffusion model.Labeling DNA for single-molecule experiments: methods of labeling internal specific sequences on double-stranded DNA Theoretical and computational modeling of target-site search kinetics in vitro and in vivo Single Qdot-labeled glycosylase molecules use a wedge amino acid to probe for lesions while scanning along DNA DNA cleavage site selection by Type III restriction enzymes provides evidence for head-on protein collisions following 1D bidirectional motion.Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes The rotation-coupled sliding of EcoRV A new approach to the problem of bulk-mediated surface diffusion.Dancing on DNA: kinetic aspects of search processes on DNA RecA filament sliding on DNA facilitates homology search Optical Methods to Study Protein-DNA Interactions in Vitro and in Living Cells at the Single-Molecule Level.

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Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

http://www.wikidata.org/entity/Q36777856

description

2008 nî lūn-bûn

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

@zh-tw

2008年论文

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2008年论文

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2008年论文

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name

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

@ast

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

@en

type

label

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

@ast

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

@en

prefLabel

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

@ast

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

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Nucleic Acids Research

P1476

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

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P2093

Alfred Pingoud

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Andreas Biebricher

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Christophe Escudé

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Claude Loverdo

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Isabelle Bonnet

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Olivier Bénichou

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Pierre Desbiolles

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Pierre-Louis Porté

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Raphaël Voituriez

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Wolfgang Wende

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P2860

Structure and function of type II restriction endonucleases

How do site-specific DNA-binding proteins find their targets?

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway.

Detection of single DNA molecules by multicolor quantum-dot end-labeling.

The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

Buffer effects on EcoRV kinetics as measured by fluorescent staining and digital imaging of plasmid cleavage

The lac repressor-operator interaction. 3. Kinetic studies

Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

Single-molecule analysis of 1D diffusion and transcription elongation of T7 RNA polymerase along individual stretched DNA molecules.

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4118-4127

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scholarly article

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10.1093/NAR/GKN376

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P433

12

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36

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Raphaël Voituriez

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2008-06-10T00:00:00Z

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5311892

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18544605

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2475641

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