about
Differential expression analysis for sequence count dataBioconductor: open software development for computational biology and bioinformaticsEnterotypes of the human gut microbiomeThe LIFEdb database in 2006From ORFeome to biology: a functional genomics pipelineThe genomic and transcriptomic landscape of a HeLa cell lineSystematic analysis of T7 RNA polymerase based in vitro linear RNA amplification for use in microarray experimentsHigh-resolution mapping of meiotic crossovers and non-crossovers in yeast.Orchestrating high-throughput genomic analysis with BioconductorGenetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal InteractionsModerated estimation of fold change and dispersion for RNA-seq data with DESeq2Count-based differential expression analysis of RNA sequencing data using R and BioconductorHTSeq--a Python framework to work with high-throughput sequencing dataVariance stabilization applied to microarray data calibration and to the quantification of differential expressionBidirectional promoters generate pervasive transcription in yeastPhenotypic profiling of the human genome by time-lapse microscopy reveals cell division genesHigh-resolution transcription atlas of the mitotic cell cycle in budding yeastA high-resolution map of transcription in the yeast genome.Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assayControl of tissue morphology by Fasciclin III-mediated intercellular adhesion.Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages.CellH5: a format for data exchange in high-content screening.Data-driven hypothesis weighting increases detection power in genome-scale multiple testing.FourCSeq: analysis of 4C sequencing data.BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.TimerQuant: a modelling approach to tandem fluorescent timer design and data interpretation for measuring protein turnover in embryos.Parameter estimation for the calibration and variance stabilization of microarray data.Making the most of high-throughput protein-interaction data.Model-based variance-stabilizing transformation for Illumina microarray data.CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.Coverage and error models of protein-protein interaction data by directed graph analysis.Graphs in molecular biologyRintact: enabling computational analysis of molecular interaction data from the IntAct repository.In situ analysis of cross-hybridisation on microarrays and the inference of expression correlationAnalyzing ChIP-chip data using bioconductor.arrayQualityMetrics--a bioconductor package for quality assessment of microarray dataMicroarray data quality control improves the detection of differentially expressed genes.h5vc: scalable nucleotide tallies with HDF5.Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3.
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hulumtues
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Wolfgang Huber
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Wolfgang Huber
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Wolfgang Huber
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Wolfgang Huber
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Wolfgang Huber
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Wolfgang Huber
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