about
Navigating 3D electron microscopy maps with EM-SURFERA large-scale evaluation of computational protein function predictionThe effect of long-range interactions on the secondary structure formation of proteinsLimitations and potentials of current motif discovery algorithms.Three-dimensional compound comparison methods and their application in drug discoveryFormyl-coenzyme A (CoA):oxalate CoA-transferase from the acidophile Acetobacter aceti has a distinctive electrostatic surface and inherent acid stabilityESG: extended similarity group method for automated protein function predictionPFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence dataApplication of 3D Zernike descriptors to shape-based ligand similarity searchingAn expanded evaluation of protein function prediction methods shows an improvement in accuracyThe emerging world of wikisAb initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genomeLocal energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.TOUCHSTONEX: protein structure prediction with sparse NMR data.TOUCHSTONE: a unified approach to protein structure prediction.Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.Assessment of protein side-chain conformation prediction methods in different residue environments.Characterization of local geometry of protein surfaces with the visibility criterion.Detecting local residue environment similarity for recognizing near-native structure models.Fast protein tertiary structure retrieval based on global surface shape similarity.Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools.Quality assessment of protein structure models.Protein structure prediction using residue- and fragment-environment potentials in CASP11.Ensemble-based evaluation for protein structure models.Sub-AQUA: real-value quality assessment of protein structure models.Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.Predicting Real-Valued Protein Residue Fluctuation Using FlexPred.BindML/BindML+: Detecting Protein-Protein Interaction Interface Propensity from Amino Acid Substitution Patterns.Effect of using suboptimal alignments in template-based protein structure prediction.Prediction of Local Quality of Protein Structure Models Considering Spatial Neighbors in Graphical Models.Improved protein surface comparison and application to low-resolution protein structure data.Variability of Protein Structure Models from Electron Microscopy.Modeling disordered protein interactions from biophysical principlesQuantification of protein group coherence and pathway assignment using functional association.A novel method for protein-protein interaction site prediction using phylogenetic substitution models.Community-wide assessment of protein-interface modeling suggests improvements to design methodology.Effective inter-residue contact definitions for accurate protein fold recognitionPredicting permanent and transient protein-protein interfaces.Computational methods for constructing protein structure models from 3D electron microscopy maps.
P50
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P50
subject
description
onderzoeker
@nl
researcher
@en
հետազոտող
@hy
name
Daisuke Kihara
@ast
Daisuke Kihara
@en
Daisuke Kihara
@es
Daisuke Kihara
@nl
type
label
Daisuke Kihara
@ast
Daisuke Kihara
@en
Daisuke Kihara
@es
Daisuke Kihara
@nl
prefLabel
Daisuke Kihara
@ast
Daisuke Kihara
@en
Daisuke Kihara
@es
Daisuke Kihara
@nl
P1006
P214
P244
P1006
P106
P214
P244
nb2011014119
P31
P496
0000-0003-4091-6614
P7859
lccn-nb2011014119