A probabilistic model of local sequence alignment that simplifies statistical significance estimation
about
Error statistics of hidden Markov model and hidden Boltzmann model resultsWhere does the alignment score distribution shape come from?HMMER web server: interactive sequence similarity searchingInfernal 1.1: 100-fold faster RNA homology searchesRfam: Wikipedia, clans and the "decimal" releaseThe Pfam protein families databaseThe MAPPER2 Database: a multi-genome catalog of putative transcription factor binding sitesMEROPS: the database of proteolytic enzymes, their substrates and inhibitorsSignificance of gapped sequence alignmentsFold and Function of the InlB B-repeatThe crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthasesSequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulenceSkylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov modelsnhmmer: DNA homology search with profile HMMsThe transcription factor encyclopediaFast filtering for RNA homology searchComparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozymaAccelerated Profile HMM SearchesBeyond the E-Value: Stratified Statistics for Protein Domain Prediction.The UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase fold.Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.Evolution of the oligopeptide transporter familyAnimal Ca2+ release-activated Ca2+ (CRAC) channels appear to be homologous to and derived from the ubiquitous cation diffusion facilitators.Computational identification of functional RNA homologs in metagenomic data.xHMMER3x2: Utilizing HMMER3's speed and HMMER2's sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation.Capturing protein sequence-structure specificity using computational sequence design.Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species.Island method for estimating the statistical significance of profile-profile alignment scoresOrthoSelect: a protocol for selecting orthologous groups in phylogenomics.The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domainsCO dehydrogenase genes found in metagenomic fosmid clones from the deep mediterranean sea.CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes.Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plantsPredicting conserved protein motifs with Sub-HMMs.The serendipitous origin of chordate secretin peptide family members.Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor systemMore than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology.Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine modelGenome sequence of the polysaccharide-degrading, thermophilic anaerobe Spirochaeta thermophila DSM 6192.
P2860
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P2860
A probabilistic model of local sequence alignment that simplifies statistical significance estimation
description
2008 nî lūn-bûn
@nan
2008 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2008 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
name
A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A Probabilistic Model of Local ...... stical Significance Estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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A probabilistic model of local ...... stical significance estimation
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P2860
P3181
P1476
A probabilistic model of local ...... stical significance estimation
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P2860
P304
P3181
P356
10.1371/JOURNAL.PCBI.1000069
P4011
377c013e78d05a5d4a9b17080fd2593a3a555bc7
P407
P50
P577
2008-05-01T00:00:00Z