Identification of hammerhead ribozymes in all domains of life reveals novel structural variations - Wikidata - wikimedia - TriplyDB

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

http://www.wikidata.org/entity/Q21145325

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The ubiquitous hammerhead ribozyme Thirty-five years of research into ribozymes and nucleic acid catalysis: where do we stand today?Elucidating the molecular architecture of adaptation via evolve and resequence experiments Unrooted unordered homeomorphic subtree alignment of RNA trees Chemistry and Biology of Self-Cleaving Ribozymes Widespread occurrence of organelle genome-encoded 5S rRNAs including permuted molecules Rethinking quasispecies theory: From fittest type to cooperative consortia New classes of self-cleaving ribozymes revealed by comparative genomics analysis Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs Prospects for riboswitch discovery and analysis Snapshot of haloarchaeal tailed virus genomes RNA motif search with data-driven element ordering.The hammerhead ribozyme: structure, catalysis, and gene regulation A novel RNA motif mediates the strict nuclear localization of a long noncoding RNA Engineered allosteric ribozymes that sense the bacterial second messenger cyclic diguanosyl 5'-monophosphate.A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity.A widespread self-cleaving ribozyme class is revealed by bioinformatics.Biochemical analysis of hatchet self-cleaving ribozymes.Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.A general design strategy for protein-responsive riboswitches in mammalian cells.Secondary structural entropy in RNA switch (Riboswitch) identification.High-throughput cellular RNA device engineering.Multi-objective optimization for RNA design with multiple target secondary structures Folding of the hammerhead ribozyme: pyrrolo-cytosine fluorescence separates core folding from global folding and reveals a pH-dependent conformational change.Processing and translation initiation of non-long terminal repeat retrotransposons by hepatitis delta virus (HDV)-like self-cleaving ribozymes An Adaptive Defect Weighted Sampling Algorithm to Design Pseudoknotted RNA Secondary Structures OLE RNA protects extremophilic bacteria from alcohol toxicity Circular RNAs with hammerhead ribozymes encoded in eukaryotic genomes: The enemy at home.Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction.Engineering a ribozyme cleavage-induced split fluorescent aptamer complementation assay.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.Structure and function of pseudoknots involved in gene expression control.Altered biochemical specificity of G-quadruplexes with mutated tetrads.Structural and Biochemical Properties of Novel Self-Cleaving Ribozymes.Ligand-dependent ribozymes.The Hammerhead Ribozyme: A Long History for a Short RNA.The 3'-untranslated region of mRNAs as a site for ribozyme cleavage-dependent processing and control in bacteria.Hammerhead Ribozymes in Archaeal Genomes: A Computational Hunt.An engineered small RNA-mediated genetic switch based on a ribozyme expression platform.G17-modified hammerhead ribozymes are active in vitro and in vivo.

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Identification of hammerhead ribozymes in all domains of life reveals novel structural variations

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2011 nî lūn-bûn

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2011年の論文

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Identification of hammerhead r ...... ls novel structural variations

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JOURNAL.PCBI.1002031

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PLOS Computational Biology

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Identification of hammerhead r ...... ls novel structural variations

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Adam Roth

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Olivia Popescu

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P2860

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

The Subviral RNA Database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs research.

In vitro evolution suggests multiple origins for the hammerhead ribozyme

Schistosome satellite DNA encodes active hammerhead ribozymes

Hammerhead-mediated processing of satellite pDo500 family transcripts from Dolichopoda cave crickets.

Functional hammerhead ribozymes naturally encoded in the genome of Arabidopsis thaliana

Geometric nomenclature and classification of RNA base pairs

Ubiquitous presence of the hammerhead ribozyme motif along the tree of life

Structure-based search reveals hammerhead ribozymes in the human microbiome

Widespread occurrence of self-cleaving ribozymes

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559220

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10.1371/JOURNAL.PCBI.1002031

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Jonathan Perreault

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Gerardo Ferbeyre

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2011-05-01T00:00:00Z

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51127693

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21573207

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