High-throughput sequence alignment using Graphics Processing Units - Wikidata - wikimedia - TriplyDB

High-throughput sequence alignment using Graphics Processing Units

High-throughput sequence alignment using Graphics Processing Units

http://www.wikidata.org/entity/Q21284218

about

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies GPU-BLAST: using graphics processors to accelerate protein sequence alignment Prospects and limitations of full-text index structures in genome analysis LookSeq: A browser-based viewer for deep sequencing data NMF-mGPU: non-negative matrix factorization on multi-GPU systems MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence Parallel mutual information estimation for inferring gene regulatory networks on GPUs Computational solutions to large-scale data management and analysis Parallel implementation of 3D protein structure similarity searches using a GPU and the CUDA.Fast and accurate protein substructure searching with simulated annealing and GPUs Accelerating large-scale protein structure alignments with graphics processing units.Accelerating epistasis analysis in human genetics with consumer graphics hardware Exploiting graphics processing units for computational biology and bioinformatics.Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms FamSeq: a variant calling program for family-based sequencing data using graphics processing units.From big data analysis to personalized medicine for all: challenges and opportunities A quick guide for developing effective bioinformatics programming skills Optimizing Data Intensive GPGPU Computations for DNA Sequence Alignment permGPU: Using graphics processing units in RNA microarray association studies.Fast parallel tandem mass spectral library searching using GPU hardware acceleration.GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores STEME: efficient EM to find motifs in large data sets GPUmotif: an ultra-fast and energy-efficient motif analysis program using graphics processing units The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules Genome-wide alteration of histone H3K9 acetylation pattern in mouse offspring prenatally exposed to arsenic Protein-ligand binding region prediction (PLB-SAVE) based on geometric features and CUDA acceleration.CLAST: CUDA implemented large-scale alignment search tool cudaMap: a GPU accelerated program for gene expression connectivity mapping.Large-scale transportation network congestion evolution prediction using deep learning theory.Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS.BarraCUDA - a fast short read sequence aligner using graphics processing units Tempest: GPU-CPU computing for high-throughput database spectral matching.Exploiting GPUs in virtual machine for BioCloud CloudBurst: highly sensitive read mapping with MapReduce A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays The feasibility of genome-scale biological network inference using Graphics Processing Units GPU acceleration of optical mapping algorithm for cardiac electrophysiology.Embedded-Based Graphics Processing Unit Cluster Platform for Multiple Sequence Alignments.Slider--maximum use of probability information for alignment of short sequence reads and SNP detection.

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High-throughput sequence alignment using Graphics Processing Units

http://www.wikidata.org/entity/Q21284218

description

2007 nî lūn-bûn

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2007 թուականին հրատարակուած գիտական յօդուած

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2007 թվականին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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name

High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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type

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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prefLabel

High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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High-throughput sequence alignment using Graphics Processing Units

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1471-2105-8-474

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BMC Bioinformatics

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High-throughput sequence alignment using Graphics Processing Units

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Amitabh Varshney

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Arthur L Delcher

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Cole Trapnell

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P2860

The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics

Improved tools for biological sequence comparison.

Versatile and open software for comparing large genomes

Basic local alignment search tool

Alignment of whole genomes

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

A whole-genome assembly of Drosophila

REPuter: the manifold applications of repeat analysis on a genomic scale

Fast algorithms for large-scale genome alignment and comparison.

Efficient multiple genome alignment.

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Michael C Schatz

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