Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
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SimulFold: simultaneously inferring RNA structures including pseudoknots, alignments, and trees using a Bayesian MCMC frameworkRNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.Partition function and base pairing probabilities of RNA heterodimersA comprehensive comparison of comparative RNA structure prediction approachesDotKnot: pseudoknot prediction using the probability dot plot under a refined energy modelIPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programmingTurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknotsStructural analysis of aligned RNAsPseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structuresRNA Movies 2: sequential animation of RNA secondary structurespknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windowsVersatile and declarative dynamic programming using pair algebras.Computational analysis of noncoding RNAsRNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technologyStructure and activity of AbiQ, a lactococcal endoribonuclease belonging to the type III toxin-antitoxin systemNovel cis-acting element within the capsid-coding region enhances flavivirus viral-RNA replication by regulating genome cyclizationRNA folding with hard and soft constraintsXML schemas for common bioinformatic data types and their application in workflow systemsShape based indexing for faster search of RNA family databases.Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1.KnotSeeker: heuristic pseudoknot detection in long RNA sequences.Prediction of RNA secondary structure with pseudoknots using integer programming.RNA folding on the 3D triangular lattice.Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model.Improved free energy parameters for RNA pseudoknotted secondary structure prediction.RNA pseudoknots: folding and finding.Thermodynamics of RNA structures by Wang-Landau sampling.Inverse folding of RNA pseudoknot structures.Annexin A2 binds RNA and reduces the frameshifting efficiency of infectious bronchitis virus.ProbKnot: fast prediction of RNA secondary structure including pseudoknots.The 3' untranslated region of Pea Enation Mosaic Virus contains two T-shaped, ribosome-binding, cap-independent translation enhancers.Conformational features of topologically classified RNA secondary structuresStatistical and Bayesian approaches to RNA secondary structure predictionThe RNA shapes studio.A 3' terminal stem-loop structure in Nodamura virus RNA2 forms an essential cis-acting signal for RNA replication.Positional mapping and candidate gene analysis of the mouse Ccs3 locus that regulates differential susceptibility to carcinogen-induced colorectal cancer.Genetic variations of the A13/A14 repeat located within the EGFR 3' untranslated region have no oncogenic effect in patients with colorectal cancer.Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationshipsEnergy parameters and novel algorithms for an extended nearest neighbor energy model of RNAA fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
P2860
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P2860
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
description
2004 nî lūn-bûn
@nan
2004 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2004 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
name
Design, implementation and eva ...... orithm based on thermodynamics
@ast
Design, implementation and eva ...... orithm based on thermodynamics
@en
Design, implementation and eva ...... orithm based on thermodynamics
@en-gb
Design, implementation and eva ...... orithm based on thermodynamics
@nl
type
label
Design, implementation and eva ...... orithm based on thermodynamics
@ast
Design, implementation and eva ...... orithm based on thermodynamics
@en
Design, implementation and eva ...... orithm based on thermodynamics
@en-gb
Design, implementation and eva ...... orithm based on thermodynamics
@nl
prefLabel
Design, implementation and eva ...... orithm based on thermodynamics
@ast
Design, implementation and eva ...... orithm based on thermodynamics
@en
Design, implementation and eva ...... orithm based on thermodynamics
@en-gb
Design, implementation and eva ...... orithm based on thermodynamics
@nl
P2860
P3181
P356
P1433
P1476
Design, implementation and eva ...... orithm based on thermodynamics
@en
P2093
Jens Reeder
Robert Giegerich
P2860
P2888
P3181
P356
10.1186/1471-2105-5-104
P407
P577
2004-08-04T00:00:00Z
P5875
P6179
1028464672