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Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support

Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support

http://www.wikidata.org/entity/Q21284313

about

Parallel computing in genomic research: advances and applications Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry A simple grid implementation with Berkeley Open Infrastructure for Network Computing using BLAST as a model Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system Executing SADI services in Galaxy Multi-omic data analysis using Galaxy.Review: High-performance computing to detect epistasis in genome scale data sets.SeqMule: automated pipeline for analysis of human exome/genome sequencing data Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.The Use of Next-Generation Sequencing in the Identification of a Fastidious Pathogen: A Lesson From a Clinical Setup Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.Bioinformatics on the cloud computing platform Azure.Scalable and cost-effective NGS genotyping in the cloud.TOGGLE: toolbox for generic NGS analyses.From the desktop to the grid: scalable bioinformatics via workflow conversion MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants.The Importance of Endophenotypes to Evaluate the Relationship between Genotype and External Phenotype.biochem4j: Integrated and extensible biochemical knowledge through graph databases.GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis.Summary of talks and papers at ISCB-Asia/SCCG 2012.Closha: bioinformatics workflow system for the analysis of massive sequencing data.Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure

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Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support

http://www.wikidata.org/entity/Q21284313

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2012 nî lūn-bûn

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1471-2105-13-77

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BMC Bioinformatics

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Shadi Alaa Issa

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A primer on metagenomics

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

MUSCLE: multiple sequence alignment with high accuracy and high throughput

MEGAN analysis of metagenomic data

Pegasys: software for executing and integrating analyses of biological sequences

Basic local alignment search tool

EMBOSS: the European Molecular Biology Open Software Suite

Environmental genome shotgun sequencing of the Sargasso Sea

The Sequence Alignment/Map format and SAMtools

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1471-2105-13-77

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scholarly article

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10.1186/1471-2105-13-77

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1

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Mohamed Abouelhoda

Moustafa Ghanem

Shadi Alaa Issa

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2012-05-04T00:00:00Z

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224912498

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