Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations
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Genomics, microRNA, epigenetics, and proteomics for future diagnosis, treatment and monitoring response in upper GI cancersHigh-throughput sequencing for biology and medicineFrom human genome to cancer genome: the first decadeAn integrated inspection of the somatic mutations in a lung squamous cell carcinoma using next-generation sequencingGene expression profiling of liver cancer stem cells by RNA-sequencingRNA2DNAlign: nucleotide resolution allele asymmetries through quantitative assessment of RNA and DNA paired sequencing dataRNA Sequencing and AnalysisWhole transcriptome RNA-Seq allelic expression in human brainA comparison of single molecule and amplification based sequencing of cancer transcriptomesAn accurate paired sample test for count data.Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes dataEmpirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution.cisASE: a likelihood-based method for detecting putative cis-regulated allele-specific expression in RNA sequencing data.A common single-nucleotide variant in T is strongly associated with chordoma.The transcriptomes of two heritable cell types illuminate the circuit governing their differentiationGene dispersion is the key determinant of the read count bias in differential expression analysis of RNA-seq data.Tumor haplotype assembly algorithms for cancer genomics.RNA-Seq using two populations reveals genes and alleles controlling wood traits and growth in Eucalyptus nitens.Detecting copy number status and uncovering subclonal markers in heterogeneous tumor biopsies.Deterministic and stochastic allele specific gene expression in single mouse blastomeresCalling amplified haplotypes in next generation tumor sequence data.Domestic dogs and cancer research: a breed-based genomics approach.MBASED: allele-specific expression detection in cancer tissues and cell lines.Gene2DGE: a Perl package for gene model renewal with digital gene expression dataTowards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.RNA-Seq and human complex diseases: recent accomplishments and future perspectives.Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection.Power analysis and sample size estimation for RNA-Seq differential expression.iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasetsPredictors of Chemosensitivity in Triple Negative Breast Cancer: An Integrated Genomic Analysis.Chemoradiation provides a physiological selective pressure that increases the expansion of aberrant TP53 tumor variants in residual rectal cancerous regions.Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma.Common oncogenic mutations are infrequent in oral squamous cell carcinoma of Asian originSnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sampleSystematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencingWhole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.Integrative network analysis identifies key genes and pathways in the progression of hepatitis C virus induced hepatocellular carcinoma.Transcriptional Dynamics of Immortalized Human Mesenchymal Stem Cells during Transformation.RNASEQR--a streamlined and accurate RNA-seq sequence analysis programDifferential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
P2860
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P2860
Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations
description
2010 nî lūn-bûn
@nan
2010 թուականին հրատարակուած գիտական յօդուած
@hyw
2010 թվականին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Tumor transcriptome sequencing ...... d with copy number alterations
@ast
Tumor transcriptome sequencing ...... d with copy number alterations
@en
Tumor transcriptome sequencing ...... d with copy number alterations
@en-gb
Tumor transcriptome sequencing ...... d with copy number alterations
@nl
type
label
Tumor transcriptome sequencing ...... d with copy number alterations
@ast
Tumor transcriptome sequencing ...... d with copy number alterations
@en
Tumor transcriptome sequencing ...... d with copy number alterations
@en-gb
Tumor transcriptome sequencing ...... d with copy number alterations
@nl
altLabel
Tumor Transcriptome Sequencing ...... d with Copy Number Alterations
@en
prefLabel
Tumor transcriptome sequencing ...... d with copy number alterations
@ast
Tumor transcriptome sequencing ...... d with copy number alterations
@en
Tumor transcriptome sequencing ...... d with copy number alterations
@en-gb
Tumor transcriptome sequencing ...... d with copy number alterations
@nl
P2093
P2860
P3181
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Tumor transcriptome sequencing ...... d with copy number alterations
@en
P2093
Adam J Broomer
Asim S Siddiqui
Brian B Tuch
Christina B Chung
Cinna K Monighetti
David I Smith
Eric J Moore
Francisco M De La Vega
Jan L Kasperbauer
P2860
P3181
P356
10.1371/JOURNAL.PONE.0009317
P407
P577
2010-01-01T00:00:00Z