Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
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Simulation of chaperonin effect on protein folding: a shift from nucleation-condensation to framework mechanismIntrinsically disordered proteins in a physics-based worldPhysicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs)Longitudinal measures of proteostasis in live neurons: features that determine fate in models of neurodegenerative diseaseExploring Strong Interactions in Proteins with Quantum Chemistry and Examples of Their Applications in Drug DesignUnbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of TrajectoriesA three dimensional visualisation approach to protein heavy-atom structure reconstructionInvestigation of protein folding by coarse-grained molecular dynamics with the UNRES force fieldImplementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamics.Coarse-Grained Models for Protein-Cell Membrane Interactions.Correlating disease-related mutations to their effect on protein stability: a large-scale analysis of the human proteome.Solvent effect on the folding dynamics and structure of E6-associated protein characterized from ab initio protein folding simulations.Computational study of aggregation mechanism in human lysozyme[D67H]Compact folding of isolated four-residue neutral peptide chains: H-bonding patterns and entropy effects.A comprehensive multidimensional-embedded, one-dimensional reaction coordinate for protein unfolding/folding.Modelling zwitterions in solution: 3-fluoro-γ-aminobutyric acid (3F-GABA).The Binding Energy Distribution Analysis Method (BEDAM) for the Estimation of Protein-Ligand Binding Affinities.Protein dynamics governed by interfaces of high polarity and low packing density.Strategies for articulated multibody-based adaptive coarse grain simulation of RNA.Computational design of a pH stable enzyme: understanding molecular mechanism of penicillin acylase's adaptation to alkaline conditionsComparative analysis of essential collective dynamics and NMR-derived flexibility profiles in evolutionarily diverse prion proteinsResolution of Two Sub-Populations of Conformers and Their Individual Dynamics by Time Resolved Ensemble Level FRET Measurements.Folding simulations of the A and B domains of protein GFolding helical proteins in explicit solvent using dihedral-biased tempering.An Analysis of Biomolecular Force Fields for Simulations of Polyglutamine in SolutionThe conformational ensembles of α-synuclein and tau: combining single-molecule FRET and simulations.Computational techniques for efficient conformational sampling of proteinsRNA folding: conformational statistics, folding kinetics, and ion electrostatics.Computational models of protein kinematics and dynamics: beyond simulation.Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.Implementations of Nosé-Hoover and Nosé-Poincaré thermostats in mesoscopic dynamic simulations with the united-residue model of a polypeptide chainBiomolecular dynamics: order-disorder transitions and energy landscapesInternal and environmental effects on folding and dimerization of the Alzheimer's β amyloid peptide.Simulation of Top7-CFr: a transient helix extension guides folding.Disease-causing point-mutations in metal-binding domains of Wilson disease protein decrease stability and increase structural dynamics.Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework.Aqueous solutions: state of the art in ab initio molecular dynamics.Physicochemical bases for protein folding, dynamics, and protein-ligand binding.Measuring the shapes of macromolecules - and why it matters.Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence.
P2860
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P2860
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
description
2007 nî lūn-bûn
@nan
2007 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2007 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
name
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@ast
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en-gb
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@nl
type
label
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@ast
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en-gb
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@nl
altLabel
Protein-folding dynamics: overview of molecular simulation techniques
@en
prefLabel
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@ast
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en-gb
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@nl
P1476
Protein-Folding Dynamics: Overview of Molecular Simulation Techniques
@en
P2093
Mey Khalili
P356
10.1146/ANNUREV.PHYSCHEM.58.032806.104614
P407
P577
2007-05-01T00:00:00Z