Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level - Wikidata - wikimedia - TriplyDB

Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level

Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level

http://www.wikidata.org/entity/Q24535523

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Mechanisms underlying epigenetic and transcriptional heterogeneity in Chinese hamster ovary (CHO) cell lines An unmethylated 3' promoter-proximal region is required for efficient transcription initiation Dissecting epigenetic silencing complexity in the mouse lung cancer suppressor gene Cadm1 Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells Aberrant regulation of DNA methylation in amyotrophic lateral sclerosis: a new target of disease mechanisms.Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer.Constitutive nucleosome depletion and ordered factor assembly at the GRP78 promoter revealed by single molecule footprinting.Nr4a3, a possibile oncogenic factor for neuroblastoma associated with CpGi methylation within the third exon.Training-free atomistic prediction of nucleosome occupancy.Assessing the efficiency and significance of Methylated DNA Immunoprecipitation (MeDIP) assays in using in vitro methylated genomic DNA Global methylation and promoter-specific methylation of the P16, SOCS-1, E-cadherin, P73 and SHP-1 genes and their expression in patients with multiple myeloma during active disease and remission Genome annotation for clinical genomic diagnostics: strengths and weaknesses Bench-to-bedside review: future novel diagnostics for sepsis - a systems biology approach.Rethinking how DNA methylation patterns are maintained Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity Association of Smoking, Alcohol Use, and Betel Quid Chewing with Epigenetic Aberrations in Cancers.Fetal growth restriction alters transcription factor binding and epigenetic mechanisms of renal 11beta-hydroxysteroid dehydrogenase type 2 in a sex-specific manner.Single-molecule analysis of chromatin: changing the view of genomes one molecule at a time Nucleosomes correlate with in vivo progression pattern of de novo methylation of p16 CpG islands in human gastric carcinogenesis.DNA methyltransferase accessibility protocol for individual templates by deep sequencing Transcriptional and epigenetic regulation of KIAA1199 gene expression in human breast cancer Elevation of peripheral BDNF promoter methylation links to the risk of Alzheimer's disease.MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects.3-D DNA methylation phenotypes correlate with cytotoxicity levels in prostate and liver cancer cell models.Elevated PLA2G7 gene promoter methylation as a gender-specific marker of aging increases the risk of coronary heart disease in females.Role of nucleosomal occupancy in the epigenetic silencing of the MLH1 CpG island.Identification of DNMT1 (DNA methyltransferase 1) hypomorphs in somatic knockouts suggests an essential role for DNMT1 in cell survival Regression hidden Markov modeling reveals heterogeneous gene expression regulation: a case study in mouse embryonic stem cells SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes Bisulfite sequencing of DNA.Simultaneous single-molecule mapping of protein-DNA interactions and DNA methylation by MAPit.Human leptin tissue distribution, but not weight loss-dependent change in expression, is associated with methylation of its promoter.Epigenetic regulation of motor neuron cell death through DNA methylation.Epigenetic regulation of bovine spermatogenic cell-specific gene boule Integrative network-based approach identifies key genetic elements in breast invasive carcinoma.Maternal Hyperglycemia Disrupts Histone 3 Lysine 36 Trimethylation of the IGF-1 Gene.Methylation level of CpG islands in GGH gene promoter in pediatric acute leukemia.FOXA1 mediates p16(INK4a) activation during cellular senescence Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes Epigenetic Aspects of Systemic Lupus Erythematosus.

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Footprinting of mammalian promoters: use of a CpG DNA methyltransferase revealing nucleosome positions at a single molecule level

http://www.wikidata.org/entity/Q24535523

description

2005 nî lūn-bûn

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2005 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

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2005 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2005年の論文

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年學術文章

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Footprinting of mammalian prom ...... ons at a single molecule level

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Nucleic Acids Research

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Footprinting of mammalian prom ...... ons at a single molecule level

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Daniel J Weisenberger

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Einav Nili Gal-Yam

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Martha M Pao

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Mehrnaz Fatemi

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Peter A Jones

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Shinwu Jeong

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P2860

Comprehensive analysis of CpG islands in human chromosomes 21 and 22

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

Regulation of p16CDKN2 expression and its implications for cell immortalization and senescence

Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

Alteration of nucleosome structure as a mechanism of transcriptional regulation

Histone methylation versus histone acetylation: new insights into epigenetic regulation.

Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: correlation of accessibility, methylation, MeCP2 binding and acetylation.

Nucleosomes inhibit the initiation of transcription but allow chain elongation with the displacement of histones.

In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins.

ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.

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e176

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10.1093/NAR/GNI180

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20

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33

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7455284

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16314307

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1292996

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