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Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

http://www.wikidata.org/entity/Q24537785

about

Identification of cyanobacterial non-coding RNAs by comparative genome analysis The mammalian transcriptome and the function of non-coding DNA sequences Synthesizing non-natural parts from natural genomic template Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.Identification of small Hfq-binding RNAs in Listeria monocytogenes Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli Transcriptional interference--a crash course Reprogramming of anaerobic metabolism by the FnrS small RNA Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles The transcriptionally active regions in the genome of Bacillus subtilis A survey of small RNA-encoding genes in Escherichia coli A comprehensive transcript index of the human genome generated using microarrays and computational approaches Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome Experimental approaches to identify non-coding RNAs An integrated approach for finding overlooked genes in Shigella Quantitative characteristics of gene regulation by small RNA Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"Identification of Histoplasma capsulatum transcripts induced in response to reactive nitrogen species.Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets Assessing the effects of data selection and representation on the development of reliable E. coli sigma 70 promoter region predictors.A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium.Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications.An assessment of the role of DNA adenine methyltransferase on gene expression regulation in E coli.RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules.Predicted transcription factor binding sites as predictors of operons in Escherichia coli and Streptomyces coelicolor.Functional genomics via metabolic footprinting: monitoring metabolite secretion by Escherichia coli tryptophan metabolism mutants using FT-IR and direct injection electrospray mass spectrometry.High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs.A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data.Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays.Tiling array analysis of UV treated Escherichia coli predicts novel differentially expressed small peptides.

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P2860

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

http://www.wikidata.org/entity/Q24537785

description

2002 nî lūn-bûn

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2002 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2002 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2002年の論文

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2002年論文

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2002年論文

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2002年論文

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2002年論文

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2002年論文

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2002年论文

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name

Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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type

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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Transcriptome analysis of Esch ...... y oligonucleotide probe arrays

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P2093

Brian Tjaden

http://www.w3.org/2001/XMLSchema#string

Carsten Rosenow

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David R Haynor

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Rini Mukherjee Saxena

http://www.w3.org/2001/XMLSchema#string

Sergey Stolyar

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P2860

Operons in Escherichia coli: genomic analyses and predictions

A functional update of the Escherichia coli K-12 genome

EcoGene: a genome sequence database for Escherichia coli K-12.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Microbial gene identification using interpolated Markov models

GeneMark.hmm: new solutions for gene finding

A computational approach to identify genes for functional RNAs in genomic sequences

Identification of novel small RNAs using comparative genomics and microarrays

Cluster-Rasch models for microarray gene expression data

Improved microbial gene identification with GLIMMER

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10.1093/NAR/GKF505

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30

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12202758

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Escherichia coli

P932

137427

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