Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation - Wikidata - wikimedia - TriplyDB

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

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Quadruplex DNA: sequence, topology and structure 5'-UTR RNA G-quadruplexes: translation regulation and targeting Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression In vivo veritas: using yeast to probe the biological functions of G-quadruplexes Multitasking in the mitochondrion by the ATP-dependent Lon protease Self-association of short DNA loops through minor groove C:G:G:C tetrads Solution structures of all parallel-stranded monomeric and dimeric G-quadruplex scaffolds of the human c-kit2 promoter Solution-state structure of an intramolecular G-quadruplex with propeller, diagonal and edgewise loops G-quadruplexes in pathogens: a common route to virulence control?G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination.Molecular models for intrastrand DNA G-quadruplexes.QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs.Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: II. The binding characterization with specific intramolecular G-quadruplex and the recognizing mechanism G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae Assessing diversity of DNA structure-related sequence features in prokaryotic genomes Unwinding the functions of the Pif1 family helicases.G Quadruplex in Plants: A Ubiquitous Regulatory Element and Its Biological Relevance.PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes.The cellular protein nucleolin preferentially binds long-looped G-quadruplex nucleic acids.Resolution and characterization of the structural polymorphism of a single quadruplex-forming sequence.Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints.Mycobacterium tuberculosis DinG is a structure-specific helicase that unwinds G4 DNA: implications for targeting G4 DNA as a novel therapeutic approach.Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?Bisquinolinium compounds induce quadruplex-specific transcriptome changes in HeLa S3 cell lines.G-quadruplex recognition activities of E. Coli MutS.Guanine-centric self-assembly of nucleotides in water: an important consideration in prebiotic chemistry.RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles Non-B DNA structure-induced genetic instability and evolution.Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation.G-quadruplexes in viruses: function and potential therapeutic applications.G-quadruplex prediction in E. coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch.Possible regulatory roles of promoter g-quadruplexes in cardiac function-related genes - human TnIc as a model.Transcription of a cis-acting, noncoding, small RNA is required for pilin antigenic variation in Neisseria gonorrhoeae Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements.The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli Formation of a unique cluster of G-quadruplex structures in the HIV-1 Nef coding region: implications for antiviral activity.The Pif1 family in prokaryotes: what are our helicases doing in your bacteria?Mapping the sequences of potential guanine quadruplex motifs.Structure-based drug design: from nucleic acid to membrane protein targets.

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Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation

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Genome-wide prediction of G4 D ...... erichia coli global regulation

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Genome-wide prediction of G4 D ...... erichia coli global regulation

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Genome-wide prediction of G4 D ...... erichia coli global regulation

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Genome-wide prediction of G4 D ...... erichia coli global regulation

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Jinoy Ravindran

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Kangkan Halder

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Nirmal Kumar

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Shantanu Chowdhury

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Swapan Kumar Das

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Veera Bhadra Rao Kummarasetti

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Crystal structure of parallel quadruplexes from human telomeric DNA

Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen

KEGG: kyoto encyclopedia of genes and genomes

Highly prevalent putative quadruplex sequence motifs in human DNA

Prevalence of quadruplexes in the human genome.

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

STRING: a database of predicted functional associations between proteins

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

Large-scale structural analysis of the core promoter in mammalian and plant genomes

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10.1101/GR.4508806

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Escherichia coli

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1457047

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