ConceptGen: a gene set enrichment and gene set relation mapping tool - Wikidata - wikimedia - TriplyDB

ConceptGen: a gene set enrichment and gene set relation mapping tool

ConceptGen: a gene set enrichment and gene set relation mapping tool

http://www.wikidata.org/entity/Q24599471

about

Transcription factors OVOL1 and OVOL2 induce the mesenchymal to epithelial transition in human cancer A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial - mesenchymal cell reprogramming and cancer progression ChIP-Enrich: gene set enrichment testing for ChIP-seq data REGNET: mining context-specific human transcription networks using composite genomic information.Modeling complex genetic and environmental influences on comorbid bipolar disorder with tobacco use disorder.categoryCompare, an analytical tool based on feature annotations.PhenoFam-gene set enrichment analysis through protein structural information The roles of TGFβ in the tumour microenvironment.Epithelial-mesenchymal transition-associated secretory phenotype predicts survival in lung cancer patients.A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder.Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes Progression of BRAF-induced thyroid cancer is associated with epithelial-mesenchymal transition requiring concomitant MAP kinase and TGFβ signaling.Microarray data analysis and mining tools Gitools: analysis and visualisation of genomic data using interactive heat-maps.Whole DNA methylome profiling in lung cancer cells before and after epithelial-to-mesenchymal transition.Developmental transcriptome analysis of human erythropoiesis.Broad-Enrich: functional interpretation of large sets of broad genomic regions Lung fibroblasts from patients with idiopathic pulmonary fibrosis exhibit genome-wide differences in DNA methylation compared to fibroblasts from nonfibrotic lung Metab2MeSH: annotating compounds with medical subject headings The metabolic demands of cancer cells are coupled to their size and protein synthesis rates Multi-edge gene set networks reveal novel insights into global relationships between biological themes.LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types Surprisal analysis characterizes the free energy time course of cancer cells undergoing epithelial-to-mesenchymal transition Pathway Distiller - multisource biological pathway consolidation.Meta-analysis of gene expression signatures defining the epithelial to mesenchymal transition during cancer progression An integrated expression profiling reveals target genes of TGF-β and TNF-α possibly mediated by microRNAs in lung cancer cells Redox processes inform multivariate transdifferentiation trajectories associated with TGFβ-induced epithelial-mesenchymal transition Robust PCA based method for discovering differentially expressed genes.WordCloud: a Cytoscape plugin to create a visual semantic summary of networks.Identification of maternally regulated fetal gene networks in the placenta with a novel embryo transfer system in mice.A systematic approach identifies FOXA1 as a key factor in the loss of epithelial traits during the epithelial-to-mesenchymal transition in lung cancer.Transcriptional profiling of diabetic neuropathy in the BKS db/db mouse: a model of type 2 diabetes.A core invasiveness gene signature reflects epithelial-to-mesenchymal transition but not metastatic potential in breast cancer cell lines and tissue samples.Genome-wide methylation and expression differences in HPV(+) and HPV(-) squamous cell carcinoma cell lines are consistent with divergent mechanisms of carcinogenesis.TGF-β stimulation in human and murine cells reveals commonly affected biological processes and pathways at transcription level.Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.Control of asymmetric Hopfield networks and application to cancer attractors Inferring genome-wide functional modulatory network: a case study on NF-κB/RelA transcription factor p53 and ΔNp63α Coregulate the Transcriptional and Cellular Response to TGFβ and BMP Signals The identification of gene expression profiles associated with progression of human diabetic neuropathy

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ConceptGen: a gene set enrichment and gene set relation mapping tool

http://www.wikidata.org/entity/Q24599471

description

2010 nî lūn-bûn

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2010 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի փետրվարին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

ConceptGen: a gene set enrichment and gene set relation mapping tool

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ConceptGen: a gene set enrichment and gene set relation mapping tool

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ConceptGen: a gene set enrichment and gene set relation mapping tool

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ConceptGen: a gene set enrichment and gene set relation mapping tool

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Alla Karnovsky

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Barbara Mirel

http://www.w3.org/2001/XMLSchema#string

H V Jagadish

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James Cavalcoli

http://www.w3.org/2001/XMLSchema#string

Maureen A Sartor

http://www.w3.org/2001/XMLSchema#string

Terry Weymouth

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Vasudeva Mahavisno

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Zachary Wright

http://www.w3.org/2001/XMLSchema#string

P2860

Gene ontology: tool for the unification of biology

The prolyl 3-hydroxylases P3H2 and P3H3 are novel targets for epigenetic silencing in breast cancer

CHAC1/MGC4504 is a novel proapoptotic component of the unfolded protein response, downstream of the ATF4-ATF3-CHOP cascade

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

From genomics to chemical genomics: new developments in KEGG

Identifying biological themes within lists of genes with EASE

The basics of epithelial-mesenchymal transition

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression

NCBI GEO: mining tens of millions of expression profiles--database and tools update

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456-63

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3669634

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10.1093/BIOINFORMATICS/BTP683

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4

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26

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Venkateshwar G Keshamouni

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2010-02-15T00:00:00Z

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40685018

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20007254

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concept mapping

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2852214

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